| Sequence ID | dm3.chr3L |
|---|---|
| Location | 24,265,202 – 24,265,262 |
| Length | 60 |
| Max. P | 0.863196 |
| Location | 24,265,202 – 24,265,262 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 54.17 |
| Shannon entropy | 0.64716 |
| G+C content | 0.31163 |
| Mean single sequence MFE | -12.97 |
| Consensus MFE | -3.06 |
| Energy contribution | -4.07 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.863196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24265202 60 - 24543557 -AGAGGGUUCUUAACUUAUAUGUAC---UCUAAAUAUAUAUGUAAGUUAU-CCAACCCAUAAACA -...(((((..(((((((((((((.---........))))))))))))).-..)))))....... ( -18.20, z-score = -4.55, R) >droAna3.scaffold_13079 87437 61 - 742402 GUGCCGGGUGUUAACUUGCAUGU---UAUCCA-ACCCCUAGUUUAACUAAUCUAAUACAUAAACA (((..((((..((((......))---))....-)))).(((.....)))......)))....... ( -9.00, z-score = -0.38, R) >droWil1.scaffold_181136 137797 51 + 2313701 --------UGUUAACUUAUAUGUAUAUAUCUACAUAUGUGUGUUAACUCA-CGAUUCCAU----- --------.((((((.((((((((......))))))))...))))))...-.........----- ( -11.70, z-score = -2.65, R) >consensus __G__GG_UGUUAACUUAUAUGUA__UAUCUA_AUAUAUAUGUUAACUAA_CCAAUCCAUAAACA .........((((((.(((((((..........))))))).)))))).................. ( -3.06 = -4.07 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:59 2011