| Sequence ID | dm3.chr3L |
|---|---|
| Location | 24,255,241 – 24,255,402 |
| Length | 161 |
| Max. P | 0.615763 |
| Location | 24,255,241 – 24,255,402 |
|---|---|
| Length | 161 |
| Sequences | 3 |
| Columns | 167 |
| Reading direction | reverse |
| Mean pairwise identity | 49.49 |
| Shannon entropy | 0.70971 |
| G+C content | 0.44447 |
| Mean single sequence MFE | -49.65 |
| Consensus MFE | -6.29 |
| Energy contribution | -3.76 |
| Covariance contribution | -2.54 |
| Combinations/Pair | 1.85 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.13 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24255241 161 - 24543557 AUAGUAACAACGGAGAGAUUAAGAUGGGCAAUUGGUACAUUCCAGCCCU-----ACAAAUCUCCAGGUCCAGAUGGCAUUCAGCCAAUCCUGCUUCAACGAGCGCUAAGUUAGCUCCCAGCGCCGGUCAGGAAAAUACUGAUCAGCA-GCCUAGCUUUAGGACAUAU ...........(((((.........((((...(((......))))))).-----.....)))))..((((.((((((.....))).)))..((((....))))((((.(((.((.....))((.((((((.......)))))).)))-)).))))....)))).... ( -50.16, z-score = -2.45, R) >droPer1.super_112 113570 166 - 182199 CUGUUAACCAAAAGGAGAAUCCACUGAGCCAUAGACUCCCAUCCUUUCCGGGCAUUAAAGCACCGGGAAUGGACGGGAUAUUCCCAGCCAUGAUGCAGAUGACCAAAGAGGUUAUCACUCCAUGGCUCUGAGCAAUACAC-UCAGCAUGUCUAAUUACAAGCUAUAU ..(((........((.....)).........(((((((((.((((((((((((......)).))))))).))).)))).......(((((((..(..(((((((.....))))))).)..)))))))(((((.......)-))))...)))))......)))..... ( -53.70, z-score = -3.34, R) >droWil1.scaffold_180026 1847 161 - 3204 AUCGUAACUACUGAAUCGAUUCAAUGGGCACUUAAUAGUUUUGCUCCUU-----UCAAAUCUCCAGGAGCGGAUGGGAUUUAUCCUGUUCUGCUCCAAAAGGGAUUUGAGUUUAUCAAACAUGUUUUGAAAAAGCUACUUGUAAGCA-GUUUUGCUACCGGGUACAU ...((..(((.((((....)))).)))..)).....((((((......(-----(((((((((..(((((((((((((....))))).))))))))....))))))))))....(((((.....))))).))))))(((((..(((.-.....)))..))))).... ( -45.10, z-score = -2.28, R) >consensus AUAGUAACAACAGAGAGAAUACAAUGGGCAAUUGAUACAUUUCCUCCCU_____UCAAAUCUCCAGGAACGGAUGGGAUUUACCCAGUCCUGCUCCAAAAGGCAAUAGAGUUUAUCACACCACCGCUCAGAAAAAUACUC_UCAGCA_GUCUAGCUACAGGAUAUAU ..........................(((....(((........((((................))))......(((.....)))...............................................................)))..)))........... ( -6.29 = -3.76 + -2.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:59 2011