| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,213,580 – 6,213,641 |
| Length | 61 |
| Max. P | 0.928391 |
| Location | 6,213,580 – 6,213,641 |
|---|---|
| Length | 61 |
| Sequences | 8 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 75.14 |
| Shannon entropy | 0.47650 |
| G+C content | 0.41274 |
| Mean single sequence MFE | -16.21 |
| Consensus MFE | -6.70 |
| Energy contribution | -6.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928391 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 6213580 61 - 23011544 ------UUCCACGGGGUCUUUCCCCUAUGAAGCGUUAAAUUGAAGCAAUUUGACACUUUAUCGUCCU ------......((((.....)))).((((((.(((((((((...))))))))).))))))...... ( -18.60, z-score = -3.60, R) >droSim1.chr2L 6008625 61 - 22036055 ------UUCCACGGGGUCUUUCCCCUAUGAAGCGUUAAAUUGAAGCAAUUUGACACUUUAUCGUCCU ------......((((.....)))).((((((.(((((((((...))))))))).))))))...... ( -18.60, z-score = -3.60, R) >droSec1.super_5 4285133 61 - 5866729 ------UUCCACGGGGUCUUUCCCCUAUGAAGCGUUAAAUUGAAGCAAUUUGACACUUUAUCGUCCU ------......((((.....)))).((((((.(((((((((...))))))))).))))))...... ( -18.60, z-score = -3.60, R) >droYak2.chr2L 15629056 61 + 22324452 ------UUCCACGGGGUCUUCCCCCUAUGAAGCGUUAAAUUGAAGCAAUUUGACACUUUAUCGUUCU ------......((((....))))..((((((.(((((((((...))))))))).))))))...... ( -18.20, z-score = -3.43, R) >droEre2.scaffold_4929 15140236 61 - 26641161 ------UUGCACGGGGUCUUCCCCCUAUGAAGCGUUAAAUUGAAGCAAUUUGACACUUUAUCGUUCU ------......((((....))))..((((((.(((((((((...))))))))).))))))...... ( -18.20, z-score = -3.13, R) >dp4.chr4_group5 84728 67 + 2436548 UCCCGAGGGGUGUAUACGGGUCUUCUAUGAAGCGUUAAAUUGAAGCAAUUUGACAGUUUAUCGUUUC .((((...........))))........((((((.(((((((...(.....).))))))).)))))) ( -13.80, z-score = -0.41, R) >droPer1.super_5 84740 67 + 6813705 UCCCGAGGGGUGUAUACGGGUCUUCUAUGAAGCGUUAAAUUGAAGCAAUUUGACAGUUUUGCGUUUC .((((...........))))........(((((((.((((((...(.....).)))))).))))))) ( -14.30, z-score = -0.35, R) >droWil1.scaffold_180708 7497540 50 - 12563649 -----------------UUUGCUUUUAUCAAGCGUUAAAUUGCAGCAAUUUGACAGUUUAUCGUUUC -----------------............(((((.((((((((((....))).))))))).))))). ( -9.40, z-score = -1.65, R) >consensus ______UUCCACGGGGUCUUUCCCCUAUGAAGCGUUAAAUUGAAGCAAUUUGACACUUUAUCGUUCU .................................(((((((((...)))))))))............. ( -6.70 = -6.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:41 2011