| Sequence ID | dm3.chr3L |
|---|---|
| Location | 24,140,357 – 24,140,450 |
| Length | 93 |
| Max. P | 0.578594 |
| Location | 24,140,357 – 24,140,450 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 55.85 |
| Shannon entropy | 0.71336 |
| G+C content | 0.31814 |
| Mean single sequence MFE | -11.42 |
| Consensus MFE | -5.45 |
| Energy contribution | -4.95 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.75 |
| Mean z-score | -0.48 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24140357 93 - 24543557 CAUAAAAAAAAAUGCAUCCAAAUAUCUCCAAUAGUUUAGGAGGUAUUAAUUUUUGUAAAAAAAAA----AACAGGCCAAAUGCCCCAUAGUGCACUG ............(((((...(((((((((.........)))))))))..................----....(((.....))).....)))))... ( -17.10, z-score = -2.23, R) >droYak2.chrX 21273884 85 - 21770863 -CUAAAAAAAAAU-UAU---AGUAUCUCAAAUAGAUUGCGAGAUAUUAAUUUAUGC---CAAAAA----AACAUGUCCAAUUCUUCAUAGUGUGCCA -............-..(---((((((((...........)))))))))........---......----.((((...............)))).... ( -8.16, z-score = -0.15, R) >droEre2.scaffold_4929 22442137 83 - 26641161 -CUAGAAAAAAAAUUAUCGUCGUAUCUUAAAUAGUUUACGAGAUAUUAAUUUAUG----CAACAA----AACAGGUCAAAUUCCCCAUAAUG----- -.............((((.(((((.((.....))..)))))))))..........----......----.......................----- ( -7.00, z-score = -0.05, R) >droAna3.scaffold_13077 156167 92 + 610351 CAUCAAAGAACAU-CAGCCAAGUACGGUGAAGAA---AAAAAGUACUAAUCCUGGUAAGGUAAAGCUUCCACAUGUUAGAGCCCCUGACUAACCUU- ...........((-(((...(((((..(......---..)..)))))....)))))(((((...(......)..(((((.....)))))..)))))- ( -13.40, z-score = 0.49, R) >consensus _AUAAAAAAAAAU_CAUCCAAGUAUCUCAAAUAGUUUACGAGAUAUUAAUUUAUGU___CAAAAA____AACAGGUCAAAUUCCCCAUAGUGC_CU_ ....................((((((((...........)))))))).................................................. ( -5.45 = -4.95 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:54 2011