| Sequence ID | dm3.chr3L |
|---|---|
| Location | 24,051,794 – 24,051,859 |
| Length | 65 |
| Max. P | 0.999652 |
| Location | 24,051,794 – 24,051,859 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 55.50 |
| Shannon entropy | 0.62916 |
| G+C content | 0.65029 |
| Mean single sequence MFE | -23.43 |
| Consensus MFE | -7.66 |
| Energy contribution | -6.67 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24051794 65 + 24543557 CGACCCGUUCGUACCGGCGUUCGACGCUGGCUGCGUCCCUCUAUGUCGCUGACUGCGACAAAAUU ......(..((((((((((.....)))))).))))..).....((((((.....))))))..... ( -24.50, z-score = -2.96, R) >droSec1.super_5 5796503 54 + 5866729 ----------GUACAGGUGUCCCGGGAUGGGCGCGUGAGAGAUGGUCGC-GCCCACCCAGGAGUU ----------.........(((.(((.((((((((...........)))-)))))))).)))... ( -26.00, z-score = -2.81, R) >droSim1.chr4 866893 57 - 949497 ---CGUACCGGUACAGGUGUCCCAGGAUGGCCGCGUGAGAG----UCGC-GCCCACCCCGGAGUU ---....((((....((....)).((.(((.(((((....)----.)))-).))))))))).... ( -19.80, z-score = -0.50, R) >consensus ___C______GUACAGGUGUCCCAGGAUGGCCGCGUGAGAG___GUCGC_GCCCACCCCGGAGUU ...................(((..((.(((..(((...........)))...)))))..)))... ( -7.66 = -6.67 + -0.99)
| Location | 24,051,794 – 24,051,859 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 55.50 |
| Shannon entropy | 0.62916 |
| G+C content | 0.65029 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -13.19 |
| Energy contribution | -13.53 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.96 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 4.14 |
| SVM RNA-class probability | 0.999652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24051794 65 - 24543557 AAUUUUGUCGCAGUCAGCGACAUAGAGGGACGCAGCCAGCGUCGAACGCCGGUACGAACGGGUCG .....((((((.....))))))......(((((.....)))))((.(.(((.......)))))). ( -21.20, z-score = -0.97, R) >droSec1.super_5 5796503 54 - 5866729 AACUCCUGGGUGGGC-GCGACCAUCUCUCACGCGCCCAUCCCGGGACACCUGUAC---------- ...((((((((((((-(((...........)))))))).))))))).........---------- ( -29.10, z-score = -5.14, R) >droSim1.chr4 866893 57 + 949497 AACUCCGGGGUGGGC-GCGA----CUCUCACGCGGCCAUCCUGGGACACCUGUACCGGUACG--- ...((((((((((.(-(((.----......)))).))))))))))..(((......)))...--- ( -27.80, z-score = -2.76, R) >consensus AACUCCGGGGUGGGC_GCGAC___CUCUCACGCGGCCAUCCUGGGACACCUGUAC______G___ ...((((((((((((.(((...........)))))))).)))))))................... (-13.19 = -13.53 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:49 2011