Locus 8501

Sequence ID dm3.chr3L
Location 23,995,408 – 23,995,516
Length 108
Max. P 0.833260
window11675

overview

Window 5

Location 23,995,408 – 23,995,516
Length 108
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 63.30
Shannon entropy 0.51310
G+C content 0.57665
Mean single sequence MFE -41.50
Consensus MFE -21.79
Energy contribution -21.60
Covariance contribution -0.19
Combinations/Pair 1.53
Mean z-score -1.48
Structure conservation index 0.53
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.84
SVM RNA-class probability 0.833260
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 23995408 108 + 24543557
CAGGUUUACAUCCAUCGCGCCAAGGCUGCCUCGGCCGUGCUGGCAAGGAUGUUCACCAAGCAACAUCUUGGGCUAGCCCUGGUACAGGAACCCUGGUAUA-ACGAGGAA
..........(((.(((.((((.((((((((..(((.....))).((((((((........)))))))))))).)))).)))).((((...)))).....-.)))))). ( -38.00, z-score =  -0.66, R)
>dp4.Unknown_group_315 4311 109 + 18952
CAACUCUAUCUCCAUAAAAGCAAGGUAGCGUCGGCGGAGCUCCUCAUUGCCAUGGAGCAGGGGCCCGCCGACAUAGCUUUAGUCCAGGAGCCGUGGAUUGCGUCAGGCA
.....((((((...........)))))).((((((((.((((((....((......))))))))))))))))...((((((((((((....).)))))))....)))). ( -40.50, z-score =  -1.25, R)
>droPer1.super_278 6671 109 - 27293
CAGCUCAACUUGCAUAAAAGCAAGGUAGCGUCGGCGGAGCUCCUCAUCGCCAUGGAGCAAGGGCUCGCCGACAUAGCUCUAGUCCAGGAGCCCUGGAUUGCGACAGGCA
..(((...(((((......)))))..)))(((((((.(((.(((..((......))...)))))))))))))...(((((((((((((...))))))))).))...)). ( -46.00, z-score =  -2.52, R)
>consensus
CAGCUCUACAUCCAUAAAAGCAAGGUAGCGUCGGCGGAGCUCCUCAUCGCCAUGGAGCAGGGGCACGCCGACAUAGCUCUAGUCCAGGAGCCCUGGAUUGCGACAGGCA
........((((...........(((...((((((((.((((....((......))....))))))))))))...))).(((((((((...)))))))))...)))).. (-21.79 = -21.60 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:46 2011