| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,994,346 – 23,994,521 |
| Length | 175 |
| Max. P | 0.982631 |
| Location | 23,994,346 – 23,994,521 |
|---|---|
| Length | 175 |
| Sequences | 3 |
| Columns | 178 |
| Reading direction | forward |
| Mean pairwise identity | 51.32 |
| Shannon entropy | 0.69956 |
| G+C content | 0.59220 |
| Mean single sequence MFE | -75.61 |
| Consensus MFE | -18.95 |
| Energy contribution | -19.63 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.982631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23994346 175 + 24543557 -GGGAAGAAUCGGGCAGCCACACUGAGUCACUCGACUGCGAUUCUCGACUCGACUGGUCAAAGC-CG-GCCAAGCGGGUCGGGCUAAAAACCCAUUACCGCAACUUGGUCAGCCUGGGGCCCGGGCUGACCCUAACCGUAAGGGACUGAGCGGGUCCAGAACAAAGUGGUAUCUUCGU -..(((((...(((.((((.....(((((.(......).))))).(((((((..(((((.....-.)-))))..))))))))))).....)))..((((((.....(((((((((((...)))))))))))......((...(((((.....)))))...))...))))))))))).. ( -75.90, z-score = -2.75, R) >droGri2.scaffold_15116 1094303 178 - 1808639 UGGGAGACCGAUGGCUGGUACACUCAGACCACCGCACCCAACACCGAACAGCGCGAGGCAAGGCGCUCAGCGCCCAAAGAGGAAGGGAGAGCUCCUGCCACCAAGGGGUCAACCCGGUGGGCUGGAUGACCCGAACCGGAGAAAUCUCUGCGGUUCAAGGGUCAAGUGGUACCUCCGG .((....))..(((..(((((((((((.((((((..(((..(..(.....((((..(((.....)))..)))).....)..)..))).((.(((((.......)))))))....)))))).)))..((((((((((((.(((....))).))))))..))))))))).))))).))). ( -77.30, z-score = -1.78, R) >droMoj3.scaffold_6496 25219068 170 - 26866924 -GGCAAGACUCGACCAUUAGGCCAGAAUUGAACAUGAAUGGUAAUGGUCGCGACUGGAGGAAGC-CUCGCAAAAAAUGGGAGGCCAAU------UUGCCUCCACUCGGACAGCCCGGCGCUCGGGAUGAUCCGAAUCGGAGAGUCCUGAGCGGCUCACGUACCAAGUGGUAUAUGCGG -(((......((((((((..((((..............))))))))))))(((.((((((..((-(((.((.....)).)))))....------...)))))).)))....))).(.((((((((((..((((...))))..)))))))))).).((..((((....))))..))... ( -73.64, z-score = -4.08, R) >consensus _GGGAAGACUCGGGCAGCAACACUGAGUCAAACGAAAACGAUACUGGACACGACUGGACAAAGC_CUCGCCAAACAAGGAGGGCCAAA_A_C__UUGCCACCACUCGGUCAGCCCGGCGCCCGGGAUGACCCGAACCGGAGAGAACUGAGCGGCUCAAGAACCAAGUGGUAUCUCCGG ..(((.........................................................((.(((..........))).))...........((((((.....(((((.((((.....)))).))))).((.(((............))).)).........))))))..))).. (-18.95 = -19.63 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:45 2011