| Sequence ID | dm3.chr2L |
|---|---|
| Location | 624,120 – 624,212 |
| Length | 92 |
| Max. P | 0.526272 |
| Location | 624,120 – 624,212 |
|---|---|
| Length | 92 |
| Sequences | 9 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 76.95 |
| Shannon entropy | 0.46473 |
| G+C content | 0.51071 |
| Mean single sequence MFE | -35.68 |
| Consensus MFE | -14.02 |
| Energy contribution | -13.88 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 624120 92 + 23011544 ----GCAGUGGCAAUGUGUUGCUG-UGGUGCAGUUGCUGCUG--CAACUGAGUGACAUGUUAAUUAGUCGCUUACAUGACAGCAG--UUUGCUG-CCAAGGC ----((..(((((..(..((((((-(.((((((((((....)--))))))((((((..........))))))..))).)))))))--..)..))-)))..)) ( -41.10, z-score = -2.75, R) >droSim1.chr2L 630732 92 + 22036055 ----GCAGUGGCACUGUGUUGCUG-UGGUGCAGUUGCUGCUG--CAACUGAGUGACAUGUUAAUUAGUCGCUUACAUGACAGCAG--UUUGCUG-CCAAGGC ----((..(((((..(..((((((-(.((((((((((....)--))))))((((((..........))))))..))).)))))))--..)..))-)))..)) ( -40.30, z-score = -2.10, R) >droSec1.super_14 606631 92 + 2068291 ----GCAGUGGCACUGUGUUGCUG-UGGUGCAGUUGCUGCUG--CAACUGAGUGACAUGUUAAUUAGUCGCUUACAUGACAGCAG--UUUGCUG-CCAAGGC ----((..(((((..(..((((((-(.((((((((((....)--))))))((((((..........))))))..))).)))))))--..)..))-)))..)) ( -40.30, z-score = -2.10, R) >droYak2.chr2L 613864 92 + 22324452 ----ACAGUGGCAAUGUGUUACUG-UGGUGCAGUUGCUGCUG--CAACUGAGUGACAUGUUAAUUAGUCGCUUACAUGACAGCAG--UUUGCUG-CCAAGGC ----((((((((.....)))))))-).(.(((((.(((((((--((..((((((((..........))))))))..)).))))))--)..))))-))..... ( -38.40, z-score = -2.46, R) >droEre2.scaffold_4929 682033 92 + 26641161 ----GCAGUGGCAAUGUGUUGCUG-UGGUGCAGUUGCUGCUG--CAACUGAGUGACAUGUUAAUUAGUCGCUUACAUGACAGCAG--UUUGCUG-CCAAGGC ----((..(((((..(..((((((-(.((((((((((....)--))))))((((((..........))))))..))).)))))))--..)..))-)))..)) ( -41.10, z-score = -2.75, R) >dp4.chr4_group3 9105734 83 + 11692001 --------------GCAGUCGCAGUCUCCGCUG-UGCUGCUG---CGCUGAGUGACAUGUUAAUUAGUCGCUUACAUGACGGCAACUUUUGCUG-CCAAGGC --------------(((((((((((....))))-))..))))---)((((((((((..........))))))).......((((.(....).))-))..))) ( -28.70, z-score = -0.64, R) >droPer1.super_8 290470 83 + 3966273 --------------GCAGUCGCAGUCUCCGCUG-UGCUGCUG---CGCUGAGUGACAUGUUAAUUAGUCGCUUACAUGACGGCAGCUUUUGCUG-CCAAGGC --------------(((((((((((....))))-))..))))---)((((((((((..........))))))).......((((((....))))-))..))) ( -35.30, z-score = -2.17, R) >droWil1.scaffold_180772 2604807 97 + 8906247 GGAGAAACAGGUGCAAAGGUGCAAGGGGAGGUG-AGUUAAGG--UGGGUGAGUGACAUGUUAAUUAGUCGCGUACAUGACAGCAAC-UUUGCUG-CCAAGGC ............((...(((((((((....((.-.((((..(--((.((((.(((........))).)))).))).)))).))..)-))))).)-))...)) ( -24.70, z-score = -0.86, R) >droGri2.scaffold_15252 10208076 97 - 17193109 ---CGACUUUAUUUGUCGUUGCUGCUGCUGCUGCUGCGACUGACUGACUGACUGACAUGUUAAUUAGUCGCUUACAUGACAGCAG--UUUGUUGGCCCAGGC ---((((.......))))..(((((((((((((..((((((((.((((((.....)).)))).))))))))...)).).))))))--).....)))...... ( -31.20, z-score = -2.07, R) >consensus ____GCAGUGGCAAUGUGUUGCUG_UGGUGCAGUUGCUGCUG__CAACUGAGUGACAUGUUAAUUAGUCGCUUACAUGACAGCAG__UUUGCUG_CCAAGGC .................((.((((......)))).))...........((((((((..........)))))))).....((((((...))))))........ (-14.02 = -13.88 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:22 2011