| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,974,571 – 23,974,642 |
| Length | 71 |
| Max. P | 0.554566 |
| Location | 23,974,571 – 23,974,642 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 54.34 |
| Shannon entropy | 0.84469 |
| G+C content | 0.39513 |
| Mean single sequence MFE | -11.42 |
| Consensus MFE | -3.98 |
| Energy contribution | -4.74 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23974571 71 + 24543557 GUGGAACGCCAAUGGCGUUUCACAGCGUAA-ACUUGAGCUAGUUCAAUUCCUACAUGAGAAGCAUAUCGACG ((((((((((...)))))))))).((....-..(((((....)))))((((.....).)))))......... ( -19.80, z-score = -2.15, R) >droPer1.super_176 52264 71 + 67533 CUAGAAUGUGAAUGGCAUUUCACAGCAGAA-AUGCGAGCUCUUGCAGUUCCUCGAUCAACACGACAUUAACG .......((.(((((((((((......)))-))))(((((.....)))))..............)))).)). ( -15.30, z-score = -0.70, R) >droVir3.scaffold_12736 460557 71 - 612119 AUGGAACGCUCGCAGCAUCAUACAAAAUGC-AAACGAACCAAAACUGUUUUUGAGAAAACAUGAAAUAGACA .(((.....(((..((((........))))-...))).)))...(((((((((......)).)))))))... ( -8.80, z-score = -0.23, R) >anoGam1.chrU 14664328 70 - 59568033 -UGGAACGCAAACGGUGUUUUAAAAAAGAA-AAUUGAGCUAGAAAACUAUUUAAAGAAAAAAUAUGUUGACU -((((((((.....))))))))........-..(((((.(((....)))))))).................. ( -6.80, z-score = -0.50, R) >triCas2.chrUn_47 85644 71 + 241962 GUGGAAUGCCAACGGC-CUACACAACAAACUAAACGAGCUCCACCAAUUUACAUUACUCAACAAUAUCGACA (((((..(((...)))-............((.....)).)))))............................ ( -6.40, z-score = -0.39, R) >consensus GUGGAACGCCAACGGCAUUUCACAACAGAA_AAACGAGCUAGAACAAUUUCUAAAAAAAAACGAUAUCGACA .((((((((.....)))))))).................................................. ( -3.98 = -4.74 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:44 2011