| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,949,693 – 23,949,805 |
| Length | 112 |
| Max. P | 0.937776 |
| Location | 23,949,693 – 23,949,805 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 53.36 |
| Shannon entropy | 0.74794 |
| G+C content | 0.43690 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -8.77 |
| Energy contribution | -7.53 |
| Covariance contribution | -1.25 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.937776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23949693 112 + 24543557 UCUUUCUCCUGUUUCAGAGCGUUGGUCAGCUUCCGUGUGGCUAUUUUAAGCUUUUGUUUUGCAG-AUGGUGAUCUGGAAGAUUGCCAUUCUGUAAGUAAGCGAUAUUUCGUGU ..................(((...(((((((.......)))).......((((....(((((((-((((..(((.....)))..))).)))))))).)))))))....))).. ( -30.80, z-score = -1.72, R) >droYak2.chrX_random 369885 99 - 1802292 UCACCGUCUUGCUUCAGAGCCCGGUUUAGAUUGCGGAUGGCUUCAUUAAGACGUUGCUUUAAGA-AUUGCGAUCUGAACCA--GCUGUUCAAUUCGCAGGCU----------- .((.(((((((.....((((((.((.......)).)..)))))...))))))).))........-.((((((..(((((..--...)))))..))))))...----------- ( -26.70, z-score = -0.25, R) >dp4.Unknown_singleton_1261 2672 109 + 6670 CUUCUAUCAUCUUCCAUUUCUUUGCGUAGUAGAUGGUUGGUUAUUUUUAACCGCUCCUUCGAGGCAUCACAGCUUCGGC--UUGCCACUCUCGCCGAAGUUUUUUCUUAUU-- ...................(((((((.(((.((.((.((((((....))))))..)).))..((((....(((....))--))))))))..)).)))))............-- ( -26.30, z-score = -2.72, R) >droPer1.super_100 121479 109 + 203787 UUUCUAUCAUCUUCCAUUUCUUUGCGUAGUAGAUGGUUGGUUAUUUUUAACCGCUCCUUCGAGGCAUCACAGCUUCGGC--UUGCCACUCUCGCCGAAGUUUUUUCUUAUU-- ...................(((((((.(((.((.((.((((((....))))))..)).))..((((....(((....))--))))))))..)).)))))............-- ( -26.30, z-score = -2.76, R) >consensus UCUCUAUCAUCUUCCAGAGCUUUGCGUAGUAGACGGUUGGCUAUUUUAAACCGCUCCUUCGAGG_AUCACAACCUCGAC__UUGCCACUCUCGCCGAAGGCUUUUCUUAUU__ .................................((((.(((((....)))))......(((((((......)))))))..............))))................. ( -8.77 = -7.53 + -1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:43 2011