| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,796,435 – 23,796,509 |
| Length | 74 |
| Max. P | 0.644769 |
| Location | 23,796,435 – 23,796,509 |
|---|---|
| Length | 74 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 52.94 |
| Shannon entropy | 0.66772 |
| G+C content | 0.36063 |
| Mean single sequence MFE | -10.80 |
| Consensus MFE | -5.25 |
| Energy contribution | -6.03 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23796435 74 - 24543557 UUUGUGCACAAUUUAUUUUAUGAACAAGGAGUAAAAAGACACCGCACGCAGAUGCUUGCAAUAAAGAAACCAUA ..((((.....((((((..........((.((......)).))(((.((....)).))))))))).....)))) ( -10.70, z-score = -0.46, R) >droEre2.scaffold_4929 2817246 59 + 26641161 ---------------UUGGUGCAGCGGGUAGGAAAAAGACAACGCAAGCGAAGGUUUUCAAAGAAGAAACCAUA ---------------.((((...(((................)))((((....))))...........)))).. ( -9.29, z-score = -0.39, R) >droWil1.scaffold_181140 510041 69 + 1556085 UUUGUGUUAAAUUU-UCUUAUUUGCGAAAAAAAGAAAAA---AUCAAGCGAAGGCUUGCAAGAAAAAAACCCA- ..((.(((...(((-((((.(((....))).))))))).---..(((((....))))).........))).))- ( -12.40, z-score = -1.19, R) >consensus UUUGUG___AAUUU_UUUUAUCAGCGAGAAGAAAAAAGACA_CGCAAGCGAAGGCUUGCAAAAAAGAAACCAUA ...........................................((((((....))))))............... ( -5.25 = -6.03 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:41 2011