| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,790,162 – 23,790,271 |
| Length | 109 |
| Max. P | 0.872572 |
| Location | 23,790,162 – 23,790,271 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 71.54 |
| Shannon entropy | 0.42199 |
| G+C content | 0.57701 |
| Mean single sequence MFE | -39.83 |
| Consensus MFE | -18.42 |
| Energy contribution | -20.18 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23790162 109 + 24543557 GGAUGUUAUGGGGGCAGGGUGUAUUGGCCACUGCAGUGGCCAGUGCACUGGGUUAAGCCAACGCUCUUCCUGGAACCACCUGUGCCGACCACUGAC---ACUGUCCUUGACU (((((((((((.(((((((((((((((((((....))))))))))).(..((...(((....)))...))..)....)))).))))..))).))))---)...)))...... ( -47.90, z-score = -2.29, R) >droSim1.chrU 2133277 91 + 15797150 GGAUGUUAUGGGGUUAGGGUGUAUCGUCC-------------------UGGGGCGAGGCAACGCUCGUCCUGGGACCACCUAUACCGACCACUGACUCCACUGACCCUUA-- ((..((((((((((((((((((((.((((-------------------..(((((((......)))))))..)))).....))))..))).))))))))).))))))...-- ( -43.00, z-score = -3.38, R) >droSec1.super_62 103958 91 - 174595 GGAUGUUAUGGGGU-AGGGUGUAUCGUCC-------------------UUGGGCGAGGCAACGCUCGUCCUGGGACCACCUGUACCAACCACUGACUCCACUGACCCUUAC- (((.((((((((((-((((((....((((-------------------(.(((((((......))))))).)))))))))).))))..))).)))))))............- ( -38.90, z-score = -2.42, R) >droYak2.chrU 14118694 92 - 28119190 GGAUGUUAUGGGGC-AGGGUGUAUCGUCCA------------------CGAGUUAAGCUAGCGCUUCCCUCCGAACCACC-GUUGCGACCACUGACUCCACUGUCCCUUUCU (((.(((((((.((-((((((..(((....------------------.(((..((((....))))..))))))..))))-.))))..))).)))))))............. ( -29.50, z-score = -1.24, R) >consensus GGAUGUUAUGGGGU_AGGGUGUAUCGUCC___________________UGGGGCAAGCCAACGCUCGUCCUGGAACCACCUGUACCGACCACUGACUCCACUGACCCUUAC_ .........((((((((((.((...........................((((((((......))))))))((.....))..............)).)).)))))))).... (-18.42 = -20.18 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:40 2011