| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,784,108 – 23,784,204 |
| Length | 96 |
| Max. P | 0.988516 |
| Location | 23,784,108 – 23,784,204 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 57.29 |
| Shannon entropy | 0.61206 |
| G+C content | 0.42361 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -5.90 |
| Energy contribution | -6.70 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.61 |
| Mean z-score | -3.83 |
| Structure conservation index | 0.19 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.32 |
| SVM RNA-class probability | 0.988516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23784108 96 - 24543557 UUUUGUCUUGUAUAUAAGACAAUACAUCAGACGAUGUUUGAUCAGGGGAAAGCCGAGAAACGAAAGUUUGUUUCUUUAGUGGAACCACCGCGAGGG ..((((((((....))))))))...(((((((...)))))))...((....((.(((((((((....)))))))))..))....)).((....)). ( -25.30, z-score = -1.80, R) >droVir3.scaffold_12958 2800308 96 + 3547706 CUUUGGUAGCAAUAUAGGCUGCCAAUGACUCAGAAGUGGUGUCCGACGAAAGUCGAGACACAAAAACUUGCCUACGAGGGGCAACUACCGUUAAAG ..((((((((.......))))))))((((....((((.(((((((((....)))).)))))....))))((((.....)))).......))))... ( -37.60, z-score = -5.09, R) >droMoj3.scaffold_6541 1724515 96 + 2543558 UCUUAUUUGAGAUAAAAGCCGAUACUGCCUCAAUGGUAGUGUCAGAUGAAAGCCUAGAUAAGAAAACUUGCUUUCUAGGAGAAACAACAGAUAAGG .((((((((...........(((((((((.....))))))))).........((((((.(((........)))))))))........)))))))). ( -30.40, z-score = -4.60, R) >consensus UUUUGUUUGAAAUAUAAGCCGAUACUGCCUCAGAAGUAGUGUCAGACGAAAGCCGAGAAACGAAAACUUGCUUACUAGGAGAAACAACCGAUAAGG ..............(((((.((((((........))))))(((((((....)))).)))..........)))))...................... ( -5.90 = -6.70 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:39 2011