Locus 8493

Sequence ID dm3.chr3L
Location 23,750,032 – 23,750,200
Length 168
Max. P 0.935031
window11666

overview

Window 6

Location 23,750,032 – 23,750,200
Length 168
Sequences 3
Columns 168
Reading direction forward
Mean pairwise identity 50.20
Shannon entropy 0.72428
G+C content 0.38348
Mean single sequence MFE -31.79
Consensus MFE -10.24
Energy contribution -8.03
Covariance contribution -2.21
Combinations/Pair 1.67
Mean z-score -1.93
Structure conservation index 0.32
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.39
SVM RNA-class probability 0.935031
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 23750032 168 + 24543557
CUCUAAAUUGUCGGCUAUCCCAAAACUUUUUGAAAAUGUUAUCACUCCUCAUUUGCAGCACCUUUGUAGAUCAAUCAUAUCACCGUGUCAACACGGUUUUAUGAAACGCAGAUCAACAACCACUAACCUCUUGGAGCUAACUUCUUUCGUCACACAGGGUUUCAAAAA
............((.....))......(((((((..(((((((.......((((((((.....))))))))...(((((..((((((....))))))..)))))......))).)))).......((((..((..((...........))..))..))))))))))). ( -32.20, z-score =  -1.66, R)
>dp4.Unknown_group_302 13436 154 - 18657
---------AUCAGCUAUUCCUAAAAUGUUUGAGAAGGUUUUAACACCUCACUUGCCCCAUCUCUGCAAGUCACUUAUAUUUCCAACUUAGCAUGGAUUUAUAAGGCGGCGAUCAACCACCACAAACUUGUUAGAGUUUACCUCUUUCAUUAUUAAAGGCUUU-----
---------...((((...........(((((.(..((((....(.((.(((((((.........))))))..((((((..((((........))))..))))))).)).)...))))..).))))).((..((((.....))))..))........))))..----- ( -32.50, z-score =  -1.84, R)
>triCas2.chrUn_268 2171 168 + 12849
UUCUAUUCUCUGCAAUUUCUCUAAAAUCUUCGAGUCAAUUCUCUACUCUUAUAUCUAUAAGUCAGUGAAAAAUCUCAUUUCGCCCCACCAACAUGGCUUCAUGGAGAAUAGAUCUACGAUAACCAACUUAGCCACUCUAACACAAUUUAUCUCGGAGGCGCUAAACAG
.((((((((((....................(((....(((.((...(((((....)))))..)).)))....))).....(((..........))).....))))))))))...............(((((..((((...............))))..))))).... ( -30.66, z-score =  -2.30, R)
>consensus
_UCUA___UAUCAGCUAUCCCUAAAAUCUUUGAGAAAGUUAUCACACCUCAUUUGCACCACCUAUGCAAAUCACUCAUAUCACCAAAUCAACAUGGAUUUAUGAAGCGCAGAUCAACAACCACAAACUUAUUAGAGCUAACAUCUUUCAUCACAAAGGGCUUAAA_A_
...............................((((................(((((.........)))))....(((((..((((........))))..)))))........................................)))).................... (-10.24 =  -8.03 +  -2.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:38 2011