| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,742,185 – 23,742,247 |
| Length | 62 |
| Max. P | 0.887176 |
| Location | 23,742,185 – 23,742,247 |
|---|---|
| Length | 62 |
| Sequences | 3 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 82.41 |
| Shannon entropy | 0.24233 |
| G+C content | 0.34812 |
| Mean single sequence MFE | -15.77 |
| Consensus MFE | -10.42 |
| Energy contribution | -11.87 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23742185 62 + 24543557 UGCGUCCGCGUCC--AUUUA-------GCUAUUGAGUAAAAAUCCA-GAAUAUUCGUCAGGAGUUUGGACAA .((....))((((--(..(.-------.((..((((((........-...))))))..))..)..))))).. ( -12.30, z-score = -0.88, R) >droSim1.chrU 8555167 72 + 15797150 UGCGUCCAUUUUCCUAUUGAUUACAUUGCUAUUAAGUAAAAAUACAAGAAUAUUUGUCAGGAGUUUGGACAG ...(((((..(((((..........(((((....)))))....(((((....))))).)))))..))))).. ( -17.50, z-score = -3.06, R) >droSec1.super_64 11898 72 + 179039 UGCGUCCAUUUUCCUAUUUAUUACAUUGCUAUUAAGUAAAAAUACAAGAAUAUUUGUCAGGAGUUUGGACAG ...(((((..(((((..........(((((....)))))....(((((....))))).)))))..))))).. ( -17.50, z-score = -3.48, R) >consensus UGCGUCCAUUUUCCUAUUUAUUACAUUGCUAUUAAGUAAAAAUACAAGAAUAUUUGUCAGGAGUUUGGACAG ...(((((..(((((..........(((((....)))))........((.......)))))))..))))).. (-10.42 = -11.87 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:37 2011