| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,655,603 – 23,655,695 |
| Length | 92 |
| Max. P | 0.949444 |
| Location | 23,655,603 – 23,655,695 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 66.67 |
| Shannon entropy | 0.45869 |
| G+C content | 0.32295 |
| Mean single sequence MFE | -21.94 |
| Consensus MFE | -16.02 |
| Energy contribution | -14.27 |
| Covariance contribution | -1.76 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949444 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 23655603 92 + 24543557 CACUGGCAGAGAUCAGCAAUUGAUGGCUGUUUGAA-CAGGGCUCUAUGA----UUUGGUGCACAAUUUGCACAAUUUUUAUUUGUUCAUUUUAACGC ..(..((((..(((((...)))))..))))..)..-..((((...((((----....(((((.....))))).....))))..)))).......... ( -18.80, z-score = 0.16, R) >droSim1.chrU 2601611 93 + 15797150 ---UAGCGACAGUCAGCGAUAGAUUGUUGCUAAAAAUAUGUUUGCAUAAAUUUUUCUUUGUGUAAUAUGCGAAAUUAUUUAUUUUU-AUUGUGGCAC ---(((((((((((.......))))))))))).........(((((((((......)))))))))..(((.(...((........)-)...).))). ( -22.00, z-score = -1.72, R) >droSec1.super_164 16490 94 - 61180 ---UAGCGACAGUCAGCGAUUGAUUGUUGCUAAAAAUAUGUUUGCAUAUUUUUUUCUUUGUGUAAUAUGCGAAAUUAUUUAUUUUUUAUUGUGGCAC ---(((((((((((((...))))))))))))).(((((..((((((((((.............))))))))))..)))))................. ( -25.02, z-score = -2.92, R) >consensus ___UAGCGACAGUCAGCGAUUGAUUGUUGCUAAAAAUAUGUUUGCAUAA_UUUUUCUUUGUGUAAUAUGCGAAAUUAUUUAUUUUU_AUUGUGGCAC ...(((((((((((.......)))))))))))....((((....)))).........(((((.....)))))......................... (-16.02 = -14.27 + -1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:34 2011