| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,644,917 – 23,645,013 |
| Length | 96 |
| Max. P | 0.529296 |
| Location | 23,644,917 – 23,645,013 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 70.34 |
| Shannon entropy | 0.57114 |
| G+C content | 0.57942 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -15.80 |
| Energy contribution | -17.80 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23644917 96 - 24543557 CCAUACUGUCCUUAUGGCUUGCGUUCCGUCUGAAUGGGGGAGAACUUAGCGGUGACGCCACUAGCAUACCUUAACCUCCCCCGAAGCCACCAUCGG .....(((......((((((.(((((.....))))(((((((......(((....)))...(((......)))..))))))))))))))....))) ( -28.60, z-score = -1.06, R) >dp4.Unknown_singleton_2057 263 85 + 645 CAAUACCCUCAUUGUGGCCAUCGUUCCAAGUUAAGGGGGGAGGAGUUACCGAUAACGGUACCGCGACACCCCCACCU------AAACCCCC----- ...........(((..((....))..)))(((.(((((((..(.(((((((....)))))..))..)..)))).)))------.)))....----- ( -22.70, z-score = 0.25, R) >droSim1.chrU 3758491 96 - 15797150 CCAUACCUUCCUUAUGGCCAUCGUUCCGCCUUGACGGGGGAGGAGUUAUAGGUGACGGCACAAGUACGCCUUCACCUCUCCCGAAACCACCACGGG ((...(((((.(((.(((.........))).))).))))).((((....((((((.(((........))).))))))))))............)). ( -30.60, z-score = -0.77, R) >droSec1.super_161 31430 88 + 45879 -------GUCCCUAUGGCCUUAGUUCCGUUUUGA-GGGGGAGGAGUUAUGGGUGACGGCACAAGCCUGCGUUCACCUCCCCCGAAACACCCACGAG -------....................(((((..-((((((((.....((..((..(((....)))..))..)))))))))))))))......... ( -29.20, z-score = -0.33, R) >droEre2.scaffold_4929 21430702 88 - 26641161 CCAUACCUUCGUUAUGGCCCUCGUUCCGUCUUGAGGUGGGAGGAGUUAUCGGUGACGGCACAGUUAUGCCUUCACCUCCCCCGCAACC-------- (((((.......)))))..((((........))))(((((.(((......(((((.((((......)))).)))))))))))))....-------- ( -30.40, z-score = -1.69, R) >droYak2.chrU 431532 89 + 28119190 CCAUACCUUCGUUGUGGCCUUCGUUCCGUCUUGAGGGGGGAGGAGUUAUCGGUGACGGCAUAAGCUUGCCCUCACCUCCCCCGAAACCC------- (((((.......)))))((((((........))))))(((.(((......(((((.((((......)))).))))))))))).......------- ( -31.30, z-score = -0.80, R) >consensus CCAUACCUUCCUUAUGGCCUUCGUUCCGUCUUGAGGGGGGAGGAGUUAUCGGUGACGGCACAAGCAUGCCUUCACCUCCCCCGAAACCCCC_____ .......((((..((((........))))..))))((((((((.......(....)(((........)))....)))))))).............. (-15.80 = -17.80 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:32 2011