| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,414,107 – 23,414,187 |
| Length | 80 |
| Max. P | 0.927302 |
| Location | 23,414,107 – 23,414,187 |
|---|---|
| Length | 80 |
| Sequences | 3 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 81.25 |
| Shannon entropy | 0.26086 |
| G+C content | 0.58835 |
| Mean single sequence MFE | -31.43 |
| Consensus MFE | -24.16 |
| Energy contribution | -25.17 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.927302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23414107 80 - 24543557 ACAAAAUGGCGAACCACACUUGGCGGCAACGUCGCGACGCAUCGUCGUGCAACUAAACAGGCGACGCGUCGUUGUUGCGC ........((((.........((((....))))(((((((.(((((((........)).))))).)))))))..)))).. ( -30.60, z-score = -0.94, R) >droSim1.chrU 9320707 78 + 15797150 --AUUACCUGGAACCACACUCGGGGACAAGGUCGCGACGCAUCGUCGUGCAGCUUGACAGGUGACGCAUCGUUGUCGCCC --....(((((........)))))..((((.((((((((...))))))).).))))...(((((((......))))))). ( -27.90, z-score = -0.81, R) >droEre2.scaffold_4929 2419923 80 + 26641161 ACAAAAACUCGAACCACACUCGGCGGCAACGUCGCGACGCAUCGUCAUGAAAAUAGACAGGCGACGCGUCGUUGUCGCCC .....................((((((((((.((((.(((...(((((....)).)))..))).)))).)))))))))). ( -35.80, z-score = -4.60, R) >consensus ACAAAAACUCGAACCACACUCGGCGGCAACGUCGCGACGCAUCGUCGUGCAACUAGACAGGCGACGCGUCGUUGUCGCCC .....................((((((((((.((((.(((...(((.........)))..))).)))).)))))))))). (-24.16 = -25.17 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:25 2011