| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,247,765 – 23,247,816 |
| Length | 51 |
| Max. P | 0.760389 |
| Location | 23,247,765 – 23,247,816 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 90.85 |
| Shannon entropy | 0.12604 |
| G+C content | 0.57516 |
| Mean single sequence MFE | -14.73 |
| Consensus MFE | -12.31 |
| Energy contribution | -12.87 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23247765 51 - 24543557 AACGGUGGAGACAAUUGGAAACGCCGUGGAGGAUGACGAUAGCGGAAAGCA .((((((....)....(....))))))..............((.....)). ( -11.70, z-score = -1.92, R) >droSec1.super_41 163103 51 - 296808 UACGGUGGAGACACAUGGAAACGCCGUGGAGGUUGCCGAUAGCGGGAGGCA (((((((....)....(....)))))))..(.((.(((....))).)).). ( -16.50, z-score = -1.98, R) >droSim1.chr3L 22416472 51 - 22553184 AACGGUGGAGACACAUGGAAACGCCGUGGAGGUUGCCGAUAGCGGGAAGCA .((((((....)....(....))))))...(.((.(((....))).)).). ( -16.00, z-score = -1.80, R) >consensus AACGGUGGAGACACAUGGAAACGCCGUGGAGGUUGCCGAUAGCGGGAAGCA .((((((....)....(....))))))...(.((.(((....))).)).). (-12.31 = -12.87 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:19 2011