| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,245,557 – 23,245,626 |
| Length | 69 |
| Max. P | 0.998431 |
| Location | 23,245,557 – 23,245,626 |
|---|---|
| Length | 69 |
| Sequences | 3 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 60.77 |
| Shannon entropy | 0.52292 |
| G+C content | 0.44474 |
| Mean single sequence MFE | -18.95 |
| Consensus MFE | -16.01 |
| Energy contribution | -14.80 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.36 |
| SVM RNA-class probability | 0.998431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23245557 69 + 24543557 AAUCUGUAUGCAGGUAUUGAGAGCUUAAAGCUGAA---AGUUUAUGGCAGAAUUUUUACGAAAAAGGAAAAU .(((((....))))).(((..(((.....)))(((---(((((......)))))))).)))........... ( -9.50, z-score = 0.12, R) >dp4.Unknown_group_29 30197 65 + 35662 AAACUGUAGGUGACCCUGGGCAGACUGAGACUGACCCCAGCCUAGGAUCACCACUUUACAGAUAA------- ...((((((((((.(((((((..................))))))).)))))....)))))....------- ( -23.67, z-score = -3.79, R) >droPer1.super_78 93552 65 + 255460 AAACUGUAGGUGACCCUGGGCAGACUGAGACUGACCCCAGCCUAGGAUCACCACUUUACAGAUAA------- ...((((((((((.(((((((..................))))))).)))))....)))))....------- ( -23.67, z-score = -3.79, R) >consensus AAACUGUAGGUGACCCUGGGCAGACUGAGACUGACCCCAGCCUAGGAUCACCACUUUACAGAUAA_______ ...((((((((((.(((((((..................))))))).)))))....)))))........... (-16.01 = -14.80 + -1.21)
| Location | 23,245,557 – 23,245,626 |
|---|---|
| Length | 69 |
| Sequences | 3 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 60.77 |
| Shannon entropy | 0.52292 |
| G+C content | 0.44474 |
| Mean single sequence MFE | -19.73 |
| Consensus MFE | -13.63 |
| Energy contribution | -15.30 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.21 |
| SVM RNA-class probability | 0.997912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23245557 69 - 24543557 AUUUUCCUUUUUCGUAAAAAUUCUGCCAUAAACU---UUCAGCUUUAAGCUCUCAAUACCUGCAUACAGAUU .......................(((........---...(((.....)))..........)))........ ( -2.80, z-score = 0.85, R) >dp4.Unknown_group_29 30197 65 - 35662 -------UUAUCUGUAAAGUGGUGAUCCUAGGCUGGGGUCAGUCUCAGUCUGCCCAGGGUCACCUACAGUUU -------....(((((....((((((((((((((((((....)))))))))....))))))))))))))... ( -28.20, z-score = -3.93, R) >droPer1.super_78 93552 65 - 255460 -------UUAUCUGUAAAGUGGUGAUCCUAGGCUGGGGUCAGUCUCAGUCUGCCCAGGGUCACCUACAGUUU -------....(((((....((((((((((((((((((....)))))))))....))))))))))))))... ( -28.20, z-score = -3.93, R) >consensus _______UUAUCUGUAAAGUGGUGAUCCUAGGCUGGGGUCAGUCUCAGUCUGCCCAGGGUCACCUACAGUUU ...........(((((....(((((((((((((((((......))))))))....))))))))))))))... (-13.63 = -15.30 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:17 2011