| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,180,553 – 23,180,605 |
| Length | 52 |
| Max. P | 0.647359 |
| Location | 23,180,553 – 23,180,605 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 58.66 |
| Shannon entropy | 0.75954 |
| G+C content | 0.40504 |
| Mean single sequence MFE | -11.08 |
| Consensus MFE | -3.42 |
| Energy contribution | -3.10 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.78 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23180553 52 - 24543557 CAGCACC-UUAAACUUAUGUCUUCAAUUAUGGCCAAUAUGGAAGACACAAGGA--- .......-.....(((.(((((((...(((.....)))..))))))).)))..--- ( -12.20, z-score = -2.31, R) >droSim1.chrU 13127908 51 + 15797150 CAGAACC-CAAAAUGUAUGUCUUCAGUUAUUGCCAACAUAGGAGACACAGUC---- .......-.........(((((((.(((......)))...))))))).....---- ( -7.20, z-score = -0.34, R) >droSec1.super_67 60537 56 + 170185 CAGCACUGCUUAACUUAUGUCUUCAAUUAUAGCUAACAUUGGAGGCACAAUUAGUC .................((((((((((..........))))))))))......... ( -9.00, z-score = -0.52, R) >droYak2.chr2R 19626927 54 + 21139217 CAGCUC--CUGAAUGUAUGUCUUCAGUUAUUGCCAAAACUGGAGCUACAUUUAGUC ......--(((((((((.(.((((((((........)))))))))))))))))).. ( -17.90, z-score = -3.87, R) >droEre2.scaffold_4929 1896452 56 + 26641161 CAGUUGUUGCUGGCCAGCAUCGUUUAUGUCCAAGAAUGUCGGAGAAACAAUUAGUC .((((((((((....)))........(.(((.........))).)))))))).... ( -9.10, z-score = 0.24, R) >consensus CAGCACC_CUAAACGUAUGUCUUCAAUUAUUGCCAACAUUGGAGACACAAUUAGUC .................(((((((.((..........)).)))))))......... ( -3.42 = -3.10 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:14 2011