| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,157,158 – 23,157,212 |
| Length | 54 |
| Max. P | 0.563445 |
| Location | 23,157,158 – 23,157,212 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 56.32 |
| Shannon entropy | 0.60164 |
| G+C content | 0.47531 |
| Mean single sequence MFE | -11.07 |
| Consensus MFE | -6.21 |
| Energy contribution | -4.33 |
| Covariance contribution | -1.88 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.58 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23157158 54 + 24543557 ----GAACGCUUAGCAAACCCUUGGCUGAGCUUAUUUACUUCUUCAUAUUGAGCGUAC ----....(((((((.........))))))).....((((((........))).))). ( -11.20, z-score = -1.61, R) >droPer1.super_425 11133 58 - 17321 UGACUUUGGGUCUGCUUGUCUCAAACGGAACUGAUCUCUCUGCUGCUGGCUAGUUUCC ....((((((.(.....).)))))).(((((((..(...........)..))))))). ( -11.00, z-score = -0.06, R) >dp4.Unknown_group_151 58693 58 + 75658 UGACUUUGGGUCUGCUUGUCUCAAACGGAACUGAUCUCUCUGCUGCUGGCUAGUUUCC ....((((((.(.....).)))))).(((((((..(...........)..))))))). ( -11.00, z-score = -0.06, R) >consensus UGACUUUGGGUCUGCUUGUCUCAAACGGAACUGAUCUCUCUGCUGCUGGCUAGUUUCC ......((((.(.....).))))...(((((((..(...........)..))))))). ( -6.21 = -4.33 + -1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:13 2011