| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,181,239 – 6,181,298 |
| Length | 59 |
| Max. P | 0.500000 |
| Location | 6,181,239 – 6,181,298 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 93.05 |
| Shannon entropy | 0.11876 |
| G+C content | 0.34571 |
| Mean single sequence MFE | -13.62 |
| Consensus MFE | -10.44 |
| Energy contribution | -10.72 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 6181239 59 + 23011544 CAACGAAAUGAAAAUGUGUAUCUCAAUUUUUGGGGGG--AAAAUAUUUUCUUUUGUCAGCU ..((((((.((((((((...(((((.....)))))..--...))))))))))))))..... ( -12.90, z-score = -2.32, R) >droEre2.scaffold_4929 15108922 58 + 26641161 CAACGAAAUGAAAAUGUGUACCCCCAUUUUUGGGGG---AAAAUAUUUUCUUUUGUCAGCU ..((((((.((((((((...((((((....))))))---...))))))))))))))..... ( -22.70, z-score = -4.98, R) >droYak2.chr2L 15595844 59 - 22324452 CAACGAACCGAAAAUGUGUAUCUCAAUUUUUGGGGGG--AAAAUAUUUUCUUUUGUCAGCU ..(((((..((((((((...(((((.....)))))..--...)))))))).)))))..... ( -10.70, z-score = -0.72, R) >droSec1.super_5 4252524 61 + 5866729 CAACGAAAUGAAAAUGUGUAUCUCAAUUUUUGCGGGGCGAAAAUAUUUUCUUUUGUCAGCU ..((((((.((((((((.(..(((.........)))..)...))))))))))))))..... ( -10.90, z-score = -0.89, R) >droSim1.chr2L 5974130 61 + 22036055 CAACGAAAUGAAAAUGUGUAUCUCAAUUUUUGCGGGGCGAAAAUAUUUUCUUUUGUCAGCU ..((((((.((((((((.(..(((.........)))..)...))))))))))))))..... ( -10.90, z-score = -0.89, R) >consensus CAACGAAAUGAAAAUGUGUAUCUCAAUUUUUGGGGGG__AAAAUAUUUUCUUUUGUCAGCU ..((((((.((((((((...((((........))))......))))))))))))))..... (-10.44 = -10.72 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:37 2011