| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,128,515 – 23,128,609 |
| Length | 94 |
| Max. P | 0.947344 |
| Location | 23,128,515 – 23,128,609 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 62.64 |
| Shannon entropy | 0.49298 |
| G+C content | 0.53969 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -15.99 |
| Energy contribution | -18.33 |
| Covariance contribution | 2.34 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23128515 94 - 24543557 CUGCUAUCACUUUGUGCGUUGAAAAGAGCUGUUCGCUGUAGCGCUCUUCGCUCUCUCGC-UCUCUAACAAAAAUUCGAGAGAGCCUGGAGCCACC ..(((((..((((.........))))(((.....))))))))(((((..(((((((((.-...............)))))))))..))))).... ( -29.99, z-score = -1.79, R) >droPer1.super_56 87537 83 - 431378 ---CGGCUGCCUCAUGUAC--ACAGCGUGAGAGCGCGGUGGCUUUCCGAGCUCUCUCGUGGCUUUCAAAAAAGUUUCAGAGAGCCAAC------- ---.(((..((...((...--.))((((....))))))..)))....(.(((((((.(..(((((....)))))..)))))))))...------- ( -32.10, z-score = -2.14, R) >dp4.chrXL_group3b 66965 83 - 386183 ---CGGCUGCCUCAUGUAC--ACAGCGUGAGAGCGCGGUGGCUUUCCGAGCUCUCUCGUGGCUUUCAAAAAAGUUUCAGAGAGCCAAC------- ---.(((..((...((...--.))((((....))))))..)))....(.(((((((.(..(((((....)))))..)))))))))...------- ( -32.10, z-score = -2.14, R) >consensus ___CGGCUGCCUCAUGUAC__ACAGCGUGAGAGCGCGGUGGCUUUCCGAGCUCUCUCGUGGCUUUCAAAAAAGUUUCAGAGAGCCAAC_______ ....(((((((...((......))((((....)))))))))))......(((((((...((((((....))))))..)))))))........... (-15.99 = -18.33 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:09 2011