| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,128,172 – 23,128,265 |
| Length | 93 |
| Max. P | 0.954311 |
| Location | 23,128,172 – 23,128,265 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 64.67 |
| Shannon entropy | 0.57431 |
| G+C content | 0.44571 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -13.35 |
| Energy contribution | -12.35 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.954311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23128172 93 - 24543557 GCCUAGUGGCCUCCGGCUUGAUCGGAGGUCGAAACAAAU-----UUAAAUGCUGCGUUAA--------AUUGGCUUGAUUUCCAGU-UGUAAUUGCACCACAGUUAC (((...((((((((((.....)))))))))).....(((-----((((........))))--------))))))............-.(((((((.....))))))) ( -25.10, z-score = -1.17, R) >droSec1.super_41 230090 106 + 296808 GCCUAGUGGCCUCUGGCUUAUUCGGAGGUCGAAUCAAAUGCUUCUUAACUGUUUGCUUAACCCGGUGCAUUUGUUUCAUUUCGAGU-UGUAAUUGUGCCACAGUUAC .......(((((((((.....)))))))))(((.(((((((......((((..(.....)..))))))))))).))).........-.(((((((.....))))))) ( -28.70, z-score = -1.67, R) >droSim1.chr3L 227866 106 + 22553184 GCCUAGUGGCCUCUGGCUUAUUCGGAGGUCGAAUCAAAUGCUUCUUAACUGUUUGCUUAACCCGGUGCAUUUGUUUCAUUUCGAGU-UGUAAUUGAGCCACAGUUAC .....(((((.((..((..((((((((...(((.(((((((......((((..(.....)..))))))))))).))).))))))))-.))....)))))))...... ( -28.90, z-score = -1.59, R) >droVir3.scaffold_12952 171971 99 + 300415 GCGUAGUGGAUUUCUGCUUCAUCUGGUGUAACACCAAAU--UUGUCGUCUGCAAAGUCGUGCCA---UGUCGGAUGAAGUUUUGGCGAAUAGUCAAACCACAUU--- .....((((......(((((((((((..(..(((....(--((((.....)))))...)))..)---..)))))))))))((((((.....))))))))))...--- ( -32.50, z-score = -3.07, R) >consensus GCCUAGUGGCCUCCGGCUUAAUCGGAGGUCGAAUCAAAU__UUCUUAACUGCUUGCUUAACCCG___CAUUGGUUUCAUUUCGAGU_UGUAAUUGAACCACAGUUAC .....(((((((((((.....)))))))........................................(((((........)))))...........))))...... (-13.35 = -12.35 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:09 2011