| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,127,019 – 23,127,101 |
| Length | 82 |
| Max. P | 0.584934 |
| Location | 23,127,019 – 23,127,101 |
|---|---|
| Length | 82 |
| Sequences | 5 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 72.34 |
| Shannon entropy | 0.47231 |
| G+C content | 0.48977 |
| Mean single sequence MFE | -18.20 |
| Consensus MFE | -11.96 |
| Energy contribution | -12.08 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23127019 82 - 24543557 CAGCCCAAGGA---GACGACGCACAUCAACCCUAUACCACGGAGCCAUCUGUAAAAGAGGACCACCGGACUAUAGGACUUAUUAA ..((....(..---..)...))........((((((...(((..((.(((.....)))))....)))...))))))......... ( -18.10, z-score = -1.87, R) >droSim1.chrU 8008508 82 + 15797150 CAGCCCAAGGA---GACGACGCACAUCAACCCUAUACCACGGAGCCAUCUGUAAAAGAGGACCACCGGACUAUAGGACUUAUUAA ..((....(..---..)...))........((((((...(((..((.(((.....)))))....)))...))))))......... ( -18.10, z-score = -1.87, R) >droSec1.super_51 19126 82 + 201256 CAGCCCAAGGA---GACAACGCACAUCAACCCUAUACCACGGAGCCAUCUGUAAAAGAGGACCACCGGACUAUAGGACUUAUUAA ..((....(..---..)...))........((((((...(((..((.(((.....)))))....)))...))))))......... ( -17.00, z-score = -1.67, R) >droYak2.chr2L 73138 77 + 22324452 GGGACCAGGG----GAUCAUCUUCGUGAAACCUAUCUACCGGAACCAUCCGUAAAGGAGGAAUACUGGAUAAUAGGAUUAA---- ....((.(((----..((((....))))..))).....((((..((.(((.....)))))....))))......)).....---- ( -17.70, z-score = 0.64, R) >droEre2.scaffold_4929 23679182 77 - 26641161 UGGACCAGGGAGUCAACCAUCCACGUGAAUCCUAUUUACCGGGACCAUCAAUAGAGGAGGAACUCUGGACCAUAGGA-------- (((.((((((..((..((.((....(((.((((.......))))...)))...))))..)).)))))).))).....-------- ( -20.10, z-score = 0.33, R) >consensus CAGCCCAAGGA___GACCACGCACAUCAACCCUAUACCACGGAGCCAUCUGUAAAAGAGGACCACCGGACUAUAGGACUUAUUAA ..............................((((((...(((..((.(((.....)))))....)))...))))))......... (-11.96 = -12.08 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:08 2011