Locus 8465

Sequence ID	dm3.chr3L
Location	23,041,667 – 23,041,744
Length	77
Max. P	0.946321

overview

Window 4

Location	23,041,667 – 23,041,744
Length	77
Sequences	4
Columns	79
Reading direction	reverse
Mean pairwise identity	60.68
Shannon entropy	0.64759
G+C content	0.53011
Mean single sequence MFE	-18.57
Consensus MFE	-10.61
Energy contribution	-10.67
Covariance contribution	0.06
Combinations/Pair	1.43
Mean z-score	-1.03
Structure conservation index	0.57
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.52
SVM RNA-class probability	0.946321
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 23041667 77 - 24543557
CACUGAGCCAACUGGUCUAGCUCGUUGGCCCG--UGUUAACUAUCCCCCCUUCAAGAUUGCGGCCGUCCUCGGUUGGUC
(((.(.((((((.((.....)).))))))).)--))........................((((((....))))))... ( -21.00, z-score =  -0.48, R)
>dp4.Unknown_group_53 32161 75 - 37457
--CUCCGACCAGUGGCCAAUUUGGUUAAGGU--UUGUUAACUACUCCCUCCUUCAAGACUUGGCCGUCCUCGGUCAAGC
--....((((((((((((((((((...(((.--..((.....))..)))...)))))..)))))))..)).)))).... ( -21.20, z-score =  -1.58, R)
>droPer1.super_90 61290 77 - 211371
CGCUCCGCCCAGUGGCCAAUUUGGCUAACAU--UUGUUAACUACUCCCUCCUUCAAGACUAGGCCGUCCUCGGUCAAGC
.(((..(((.(((((((....(((.((((..--..)))).)))....((......))....)))))..)).)))..))) ( -16.80, z-score =  -0.40, R)
>droWil1.scaffold_181154 1378002 68 - 4610121
-----------CAGGGUCAGUUCGUUAGAUUGUUUGUUAACUUCUCCCCUUCUAAGUUCAUUGCCGUCCUCGGUGAUGC
-----------.((((..((...(((((........)))))..)).))))........(((..(((....)))..))). ( -15.30, z-score =  -1.67, R)
>consensus
__CUCCGCCCACUGGCCAAGUUCGUUAACAU__UUGUUAACUACUCCCCCCUUAAAGACUUGGCCGUCCUCGGUCAAGC
.......................((((((......)))))).................((((((((....)))))))). (-10.61 = -10.67 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:06 2011