| Sequence ID | dm3.chr3L |
|---|---|
| Location | 23,007,755 – 23,007,858 |
| Length | 103 |
| Max. P | 0.645706 |
| Location | 23,007,755 – 23,007,858 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 72.29 |
| Shannon entropy | 0.60282 |
| G+C content | 0.44707 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -10.85 |
| Energy contribution | -11.12 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.63 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.645706 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 23007755 103 - 24543557 ---CGCUACAAACCUAUUUGAUUCUGGAAAUCCGGGAUCAUCUACGGAACAGGAGAAUGUCACACUCUUUUUCUUAACGGCGACUAACGGGAAAUGAGAUAGUGCC ---(((((....(((...(((((((((....)))))))))((....))..)))...........(((.((((((....(....)....)))))).))).))))).. ( -27.00, z-score = -2.01, R) >droSim1.chr3L 22281248 103 - 22553184 ---CGCUACAAACCUAUUUGAUUCUGGAAAUCCGGGAUCAUCUACGGAACAGGAGAAUGUCACACUCUUUUUCUUAACGGCGACUAACGGGAAAUGAGAUAACGCC ---.((......(((...(((((((((....)))))))))((....))..)))...........(((.((((((....(....)....)))))).))).....)). ( -25.00, z-score = -1.98, R) >droSec1.super_41 30779 103 - 296808 ---CGCUACAAACCUAUUUGAUUCUGGAAAUCCGGGAUCAUCUACGGAACAGGAGAAUGUCACACUCUUUUUCUUAACGGCGACUAACGGAAAAUGAGAUAACGCC ---.((......(((...(((((((((....)))))))))((....))..)))...........(((.((((((....(....)....)))))).))).....)). ( -25.50, z-score = -2.45, R) >droYak2.chrU 2530850 103 - 28119190 ---UGCUACAAACCUAUUUGAUUCUGGAAAUCCUGGAUCAUCUACAGAACAGGAGAAUGUUACACUCUUUUUCUUAACGGCAACUAACGGGAAAUGAGAUAAUGUU ---.........(((...((((((.((....)).))))))((....))..)))..(((((((..(((.((((((....(....)....)))))).))).))))))) ( -19.10, z-score = -0.67, R) >droEre2.scaffold_4784 22664516 103 - 25762168 ---UGCUACAAACCUAUUUGAUUCUGGAAAUCCUGGAUCAUCUACAGAACAGGAGAAUGUCACACUCUUUUUCUUAACGGCGACUAACGGAAAAUGAGAUAAUGCC ---.((......(((...((((((.((....)).))))))((....))..)))...........(((.((((((....(....)....)))))).))).....)). ( -18.40, z-score = -0.49, R) >droAna3.scaffold_13337 22768954 103 - 23293914 ---AGUUACAAACCUAUUUGUGUCUGGAUAUCCAGGAUCUUCUACGGAACAAGUGAAUACUACGCUUUUUUUUUUUACAGCGAUUAAGGGAAAAUUAGAAAGUGUA ---...........(((((((.(((((....)))))....((....))))))))).....((((((((((..((((.(..(......).)))))..)))))))))) ( -21.40, z-score = -0.87, R) >dp4.chrXR_group6 10515808 103 + 13314419 ---UGCUACAAACCUAUUCGAUUCCGGGUAUCCCGGAUCGUCCACAGAGCACGAGAAGAUGACGCUCUUCUUUUUCACAGCAAUGGGUGGAAAGUGCGUCAGGGUA ---........((((...((((.(((((...)))))))))......(((((((((((((......)))))))((((((........)))))).)))).)).)))). ( -33.70, z-score = -1.75, R) >droWil1.scaffold_180949 4607190 103 - 6375548 ---UGGUACAAACCUAUUCGAUUCGGGAUAACCCGGAUCAUCCACAGAGCAGGAGAAUAUCACACUCUUCUUUUUAACAGCAAUCGGAGGGAAAUGAGUCAGAGUU ---.(((....)))(((((((((((((....)))))))).(((........))))))))((..(((((((((((..(......)..)))))))..))))..))... ( -26.60, z-score = -1.71, R) >droVir3.scaffold_13049 11187894 102 + 25233164 ----GCUACAAACCUAUUCGAUUCGGGGUAGCCCGGAUCAUCCACAGAGCAAUAAAAGAUGACGCUCUUCUUCUUAAUAGCAGUCGGUGGAAAGUGCGUCAGCGUG ----(((((..........((((((((....)))))))).((((((((((.............))))).((.((....)).))...)))))......)).)))... ( -28.72, z-score = -1.25, R) >droGri2.scaffold_15110 16156435 106 - 24565398 UGUGGCUACAAACCUAUUCGAUUCGGGAUAGCCCGGAUCUUCCACAGAGCAAUAAAAAAUGACGCUCUUCUUCUUAAUGGCAAUGGGUGGAAAGUGUGUCAAAGUC ..(((((((..........((((((((....))))))))(((((((((((.............)))))...((.....))......)))))).))).))))..... ( -29.02, z-score = -1.52, R) >droMoj3.scaffold_6680 13268143 106 - 24764193 GGCGGCUACAAACCUAUUUGAUUCGGGAUAGCCCGGAUCAUCCACGGCACAAUAGAAAAUGACGCUCUUCUUCUUGAUGGCAAUCGGUGGAAAGUGCGUCAAAGUA .((((.......))....(((((((((....)))))))))......))...........((((((.(((.((((((((....))))).)))))).))))))..... ( -31.40, z-score = -1.40, R) >anoGam1.chr3L 40119051 91 - 41284009 ---------------AGUCGCUGCCGGAUUUCCUCGAUCCUCGAUCGAGCAGUUAAACGUCACGCUGCGCCGCUUGAUCGCGAUGUACGGAUAGUGCACCAUGGAC ---------------.(((((....(((((.....)))))..((((((((.((....((...))....)).)))))))))))))((((.....))))......... ( -27.00, z-score = 0.44, R) >consensus ___UGCUACAAACCUAUUUGAUUCUGGAUAUCCCGGAUCAUCUACAGAACAGGAGAAUAUCACACUCUUCUUCUUAACGGCAAUUAACGGAAAAUGAGACAAUGUC ....(((............((((((((....))))))))......((((.((((...........)))).))))....)))......................... (-10.85 = -11.12 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:04 2011