| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,983,418 – 22,983,483 |
| Length | 65 |
| Max. P | 0.916998 |
| Location | 22,983,418 – 22,983,483 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 47.99 |
| Shannon entropy | 0.78445 |
| G+C content | 0.38804 |
| Mean single sequence MFE | -9.16 |
| Consensus MFE | -3.68 |
| Energy contribution | -3.28 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22983418 65 + 24543557 ------AACAAUUUUACUGGCGCAGUCGGUAGGAUAC--AAAAGUAUCCGAAAAAAAAGAACCUUCGAGUGGA ------........(((((((...)))))))((((((--....))))))............((.......)). ( -14.90, z-score = -1.75, R) >droEre2.scaffold_4929 1697235 50 - 26641161 ------AAAAAGUUUAUUGGCGCAGUCGGUAGGAUACUGAAAAAAGUCCCAGUAAG----------------- ------.......(((((((.((..((((((...)))))).....)).))))))).----------------- ( -11.40, z-score = -2.37, R) >droYak2.chr2h_random 2389879 50 - 3774259 ------AAAAAGUUUAUUGGCGCAGUCGGUAGGAUACUGAAAAAAGUCCUAGUAAA----------------- ------......((((((((.((..((((((...)))))).....)).))))))))----------------- ( -9.20, z-score = -1.32, R) >droSim1.chr3h_random 185561 56 + 1452968 AAUCAUAUACCCUUCGUAUGUAAAGAAAACCCCCAAAUAUAAAACGUCCAUGUAGC----------------- ....((((((.....))))))...................................----------------- ( -2.80, z-score = -0.83, R) >droWil1.scaffold_180766 50556 52 - 62785 ------GGAUUUAUUACUGGCGCAGUCGGUAGGAUAAAACGAAAUAACUUAGUGCGUG--------------- ------.............(((((.(.(((................))).).))))).--------------- ( -7.49, z-score = 0.32, R) >consensus ______AAAAAGUUUAUUGGCGCAGUCGGUAGGAUACUAAAAAAAGUCCUAGUAAA_________________ .............((((((((...))))))))......................................... ( -3.68 = -3.28 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:03 2011