| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,933,966 – 22,934,023 |
| Length | 57 |
| Max. P | 0.989728 |
| Location | 22,933,966 – 22,934,023 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 60.21 |
| Shannon entropy | 0.63840 |
| G+C content | 0.36589 |
| Mean single sequence MFE | -10.00 |
| Consensus MFE | -5.28 |
| Energy contribution | -4.80 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22933966 57 + 24543557 AUAGUUGAGGAAUUAGACUUGCUUUAAAAUUGAGUAAGUGAGUAACGAACUGACUGG- .(((((..(..(((..((((((((.......)))))))).)))..).))))).....- ( -11.80, z-score = -2.41, R) >droPer1.super_9 2396727 50 - 3637205 --------CCAAUUGCGAUGAUAUUUAAGUUGUUUCUGUUAUUUCCCAUGUCGCCAGC --------......(((((((.((...((......))...)).))....))))).... ( -4.90, z-score = 0.08, R) >dp4.chrXR_group6 10368584 50 - 13314419 --------CCAAUUGCGAUGAUAUUUAAGUUGUUUCUGUUAUUUCCCAUGUCGCCAGC --------......(((((((.((...((......))...)).))....))))).... ( -4.90, z-score = 0.08, R) >droSec1.super_11 2836112 56 + 2888827 AUAGUUGAGGAAUUAGACUUGCUUUAAAAUUGAGCAAGUGAGUAAC-AACUAACUGG- .((((((....(((..((((((((.......)))))))).)))..)-))))).....- ( -14.20, z-score = -3.10, R) >droSim1.chr3L 22211709 56 + 22553184 AUAGUUGAGGAAUUAGACUUGCUUUAAAAUUGAGCAAGUGAGUAAC-AACUAACUGG- .((((((....(((..((((((((.......)))))))).)))..)-))))).....- ( -14.20, z-score = -3.10, R) >consensus AUAGUUGAGGAAUUAGACUUGCUUUAAAAUUGAGUAAGUGAGUAAC_AACUAACUGG_ ................((((((((.......))))))))................... ( -5.28 = -4.80 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:02 2011