| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,925,175 – 22,925,266 |
| Length | 91 |
| Max. P | 0.780178 |
| Location | 22,925,175 – 22,925,266 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 65.58 |
| Shannon entropy | 0.69682 |
| G+C content | 0.53984 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -12.94 |
| Energy contribution | -13.80 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22925175 91 - 24543557 GCCAGGUGGCGCCA--UUGUGUCGCCAUACGAGU--AUAUGG-UGAUGGAGCUCCGAAAGUUGUUUGCUACAUUUGACAGUCCCACCAGCAGGCAU (((.(.(((.(..(--(((((((((((((.....--.)))))-)))).((((..(....)..))))..........)))))..).))).).))).. ( -29.60, z-score = -1.00, R) >droSim1.chr3L 22203389 93 - 22553184 GCCAGGUGGCGCCA--UUGUGUCGCCAUACAUGGUGGUACGG-UGAUGGAGCUCCGAAAGUUGUUUGCUACAUUUGACAGUCCCACCAGCAGGCAU (((.((((((((..--..)))))))).....((((((.((.(-(((((.(((..(....)......))).))))..)).)).))))))...))).. ( -35.50, z-score = -1.60, R) >droSec1.super_11 2828007 93 - 2888827 GCCAGGUGGCGCCA--UUGUGUCGCCAUACAUGGUGGUACGG-UGAUGGAGCUCCGAAAGUUGUUUGCUACAUUUGGCAGUCCCACCAGCAGGCAU (((.((((((((..--..)))))))).....((((((.((..-.....((((..(....)..))))((((....)))).)).))))))...))).. ( -37.20, z-score = -1.63, R) >droYak2.chr3L 23405877 84 - 24197627 GCCAGGUGACGCUA--UUGUGUCGCCACAUAUGGU-GUA--------GGAGCUCCGAAAGUUGUUUGCUACAUUUGACAGUCGCGCC-GCAGGCAU (((.((((((((..--..))))))))......(((-((.--------((....))((..((((..((...))..))))..)))))))-...))).. ( -31.30, z-score = -1.85, R) >droEre2.scaffold_4784 22575712 85 - 25762168 GCCAGGUGGCACCA--UUGUGUCGCCAUAUAUGGUGAA---------GGAGCUCCGAAAGUUGUUUGCUACAUUUGACAGUCGCACCAGCAGGCAU (((.((((((((..--..)))))))).....(((((..---------((....))((..((((..((...))..))))..)).)))))...))).. ( -29.60, z-score = -1.70, R) >droPer1.super_9 2388137 94 + 3637205 GCCAGGUGACGCCACUCUGUGGAGCCACAUGUGACGAAGGAGCUGCCAAAAGUACG--AGUAGUUUGCCGCACUUGACAGACAACCAAGCAACCAU ..((((((.((.(((..((((....)))).))).))..((.((((((........)--.)))))...)).)))))).................... ( -22.70, z-score = 0.41, R) >droWil1.scaffold_180949 4365117 73 - 6375548 GCCAGGUGGCGCCA--CUGGAUGGGUGGAAGAGGAUAUGCGUACACCGUAUGUGUAGGAGUUAGCAGACAAGCAU--------------------- (((....))).(((--((.....))))).......(((((((((...))))))))).......((......))..--------------------- ( -17.80, z-score = 0.54, R) >consensus GCCAGGUGGCGCCA__UUGUGUCGCCAUACAUGGUGAUACGG_UGAUGGAGCUCCGAAAGUUGUUUGCUACAUUUGACAGUCCCACCAGCAGGCAU (((.((((((((......))))))))......................((((..(....)..)))).........................))).. (-12.94 = -13.80 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:46:00 2011