| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,921,700 – 22,921,775 |
| Length | 75 |
| Max. P | 0.591304 |
| Location | 22,921,700 – 22,921,775 |
|---|---|
| Length | 75 |
| Sequences | 7 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 71.46 |
| Shannon entropy | 0.54260 |
| G+C content | 0.55669 |
| Mean single sequence MFE | -21.31 |
| Consensus MFE | -9.90 |
| Energy contribution | -9.79 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22921700 75 - 24543557 AUCGAAGGCGACGUCCUAGGGCACUCCCAUCGCACACUCUACACGAUGGG----GCUUUUCAGCCUUAUCGGGCCAUUU ......(((.........(((....)))...............(((((((----(((....)))))))))).))).... ( -23.70, z-score = -1.95, R) >droPer1.super_9 2380110 79 + 3637205 AUUCCCGCAGACGAGCGAGCGUCCUGCCAUUCGAUACUCUUCACAAUCGAGGUCGCGCCGCCACCUUAUCGGGCCAUUU ...((((.((..(.(((.((((...(((..(((((..........)))))))).))))))))..))...))))...... ( -20.90, z-score = -0.46, R) >dp4.chrXR_group6 10350210 79 + 13314419 AUUCCCGCAGACGAGCGAGCGUCCUGCCAUUCGAUACUCUUCACAAUCGAGGUCGCGCCGCCACCUUAUCGGGCCAUUU ...((((.((..(.(((.((((...(((..(((((..........)))))))).))))))))..))...))))...... ( -20.90, z-score = -0.46, R) >droSim1.chr3L 22196237 75 - 22553184 ACUGAAGACGACGUCCCAGGGCACUCCCGUCGCACACUCUGCACGAUGGG----GCUUUUCAGCCUUAUCGGGCCAUUU .(((..(((...))).)))(((.........(((.....))).(((((((----(((....)))))))))).))).... ( -24.80, z-score = -1.51, R) >droSec1.super_11 2824014 75 - 2888827 ACUGAAGACGACGUCCCAGGGCACUCCCGUCGCACACUCUGCACGAUGGG----GCUUUUCAGCCUUAUCGGGCCAUUU .(((..(((...))).)))(((.........(((.....))).(((((((----(((....)))))))))).))).... ( -24.80, z-score = -1.51, R) >droEre2.scaffold_4784 22569876 62 - 25762168 -------------AUUUAGGACACUCCCGUCGCACACUCCACACGAUGGG----GCUUUUCAGCCUUAUCGGGCCAUUU -------------......(((......)))............(((((((----(((....))))))))))........ ( -17.00, z-score = -2.12, R) >droYak2.chr3L 23399243 75 - 24197627 AUUGAAAACAACGUUCUAGGGCACUCCCGUCGCACACUCUAUACGAUGGG----ACUUUUCAGUCUUAUCGGGCCAUUU ..((((((....(((....)))..((((((((...........)))))))----).))))))((((....))))..... ( -17.10, z-score = -1.30, R) >consensus AUUGAAGACGACGUCCUAGGGCACUCCCGUCGCACACUCUACACGAUGGG____GCUUUUCAGCCUUAUCGGGCCAUUU ..................((((...(((((((...........)))))))....))))....((((....))))..... ( -9.90 = -9.79 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:59 2011