| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,904,717 – 22,904,809 |
| Length | 92 |
| Max. P | 0.555499 |
| Location | 22,904,717 – 22,904,809 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 74.49 |
| Shannon entropy | 0.45907 |
| G+C content | 0.47919 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -15.72 |
| Energy contribution | -16.44 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22904717 92 - 24543557 GACACACGCACCCACGCACC-UUGGGUGCAAUGACCCCAGCAGGAGGGGU-GUUUUUGUUUUCGAAAUCGCAUACGCACAGUUAAAUACAAUUG (((....(((((((......-.)))))))....(((((.......)))))-))).((((.((..(....((....))....)..)).))))... ( -24.00, z-score = -0.76, R) >droSim1.chr3L 22178694 93 - 22553184 GGCUCACGCACCCACGCACC-UUGGGUGCAAUGACCCCAGCAGGAGGGGUGGUAUUUGAUUUUGAAAUCGCAUACGCACAGUUAAAUACAAUUG .......(((((((......-.)))))))....(((((.......))))).((((((((((.((............)).))))))))))..... ( -28.40, z-score = -1.41, R) >droSec1.super_11 2806782 93 - 2888827 GGCUCACGCACCCACGCACC-UUGGGUGCAAUGACCCCAGCAGGAGGGGUGGUAUUUGAUUUUGAAAUCGCAUACGCACAGUUAAAUACAAUUG .......(((((((......-.)))))))....(((((.......))))).((((((((((.((............)).))))))))))..... ( -28.40, z-score = -1.41, R) >droEre2.scaffold_4784 22553893 93 - 25762168 GGGUCACGCACCCACGCACC-UUGAGUGCAGUGACCCCAGCAGGAGGUGUGGUAUUUGUUUUUGAAAUCGCAUACGCACACUAGAAUGCAAUUG (((((((((((.((......-.)).)))).)))))))..(((...((((((((((.((..........)).)))).))))))....)))..... ( -32.60, z-score = -2.31, R) >droVir3.scaffold_13049 10938299 84 + 25233164 ------AAUGCCUGCAUAUCAAUACAUGCGAGGAAAUUACAAAGGAGG---GUAUUUGUUUGCCAAGAGACAUAAG-AAAUGCAAAUGCAAUUG ------..(((.(((((.((.......(((((.((((.((........---)))))).)))))(....)......)-).)))))...))).... ( -13.00, z-score = 0.62, R) >consensus GGCUCACGCACCCACGCACC_UUGGGUGCAAUGACCCCAGCAGGAGGGGUGGUAUUUGUUUUUGAAAUCGCAUACGCACAGUUAAAUACAAUUG .......(((((((........)))))))....(((((.......))))).((((((((((..(....)((....))..))))))))))..... (-15.72 = -16.44 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:59 2011