| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,893,550 – 22,893,646 |
| Length | 96 |
| Max. P | 0.519326 |
| Location | 22,893,550 – 22,893,646 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 72.12 |
| Shannon entropy | 0.50998 |
| G+C content | 0.45652 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -13.80 |
| Energy contribution | -13.30 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.65 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519326 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22893550 96 - 24543557 CGCUCCGGCUGCUCCUUGUGCUUCCAAAAAGGCGCACUUAAUUU-AAAAAUAGAAUUUUGCCCUCUUGGCGAGGAGGGCCAACCGUUUUUCCGCUUG ......((((.((((((((((((......)))))).........-..............(((.....)))))))))))))................. ( -25.70, z-score = -0.17, R) >droEre2.scaffold_4784 22543031 94 - 25762168 CGUUCCGGCCGCUCCUUGUGCCUCCAAAAAGGCACACUUAAUUUGAAAAAUAGAAUUUUGCCCUCUUGGC---GAAGGCCAAUCGUUUUUCCGCUUG ......((((......(((((((......)))))))....................((((((.....)))---)))))))................. ( -25.50, z-score = -1.95, R) >droSec1.super_11 2795955 96 - 2888827 CGCUCCGGCUGCUCCUUGUGCCUCCAAAAAAGCGCACUUAAUUU-AAAAAUAGAAUUUUGCCCUCUUGGCGAGGAGGGCCAACCGUUUUUCCGCUUG ......((((.((((((((((((.......)).)))).......-..............(((.....)))))))))))))................. ( -24.00, z-score = -0.07, R) >droSim1.chr3L 22166356 96 - 22553184 CGCUCCGGCUGCUCCUUGUGCCUCCAAAAAGGCGCACUUAAUUU-AAAAAUAGAAUUUUGCCCUCUUGGCGAGGAGGGCCAACCGUUUUUCCGCUUG ......((((.((((((((((((......)))))).........-..............(((.....)))))))))))))................. ( -28.40, z-score = -1.01, R) >droWil1.scaffold_180949 4312329 93 - 6375548 CGCUCCUGUU-UUGCAAGUGCGCCUAAAAGCACACACUUCAUUU-CUAAAUAGAAUUUUGCAAU-UCGCCAAAAGUUUUUUUUCCCCCUUUUCUUU- .......(..-((((((((((........)))).........((-((....))))..)))))).-.).............................- ( -13.80, z-score = -1.50, R) >droGri2.scaffold_15110 15913320 91 - 24565398 --UGGGUGCU-CAGCUGGUGCGCCUAAAAGCACACACUUCAUUU-CUAAAUAGAAUUUCGCAAU-UUGCCAAAAGUUUUCUCAAAUUUUUCUCUUU- --(((((((.-(.....).)))))))...(((..........((-((....)))).........-.))).((((((((....))))))))......- ( -13.85, z-score = 0.35, R) >consensus CGCUCCGGCUGCUCCUUGUGCCUCCAAAAAGGCACACUUAAUUU_AAAAAUAGAAUUUUGCCCUCUUGGCGAGGAGGGCCAACCGUUUUUCCGCUUG .....(((.........((((((......))))))........................((((((((....))))))))...........))).... (-13.80 = -13.30 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:58 2011