| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,892,462 – 22,892,559 |
| Length | 97 |
| Max. P | 0.952768 |
| Location | 22,892,462 – 22,892,559 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 58.30 |
| Shannon entropy | 0.74531 |
| G+C content | 0.45650 |
| Mean single sequence MFE | -17.23 |
| Consensus MFE | -8.16 |
| Energy contribution | -8.80 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.952768 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22892462 97 + 24543557 AUCAGUUUUCCCAAAUUUACAUUUGUCGUUAACAUUUUUAUUGCGCAGAAACUCUUCACCGCCGUCCUUGCCAUCUGCCUAGUGGCCUUUGCGGCAG .....................((((.(((.............)))))))...........(((((....(((((.......)))))....))))).. ( -18.22, z-score = -0.99, R) >droSim1.chr3L 22165293 84 + 22553184 -------------AUAAGUUUUCGAACACUAACAUUUGUCGUUGACAGAAACUCUUCACCGCCGUCCUUGCCAUCUGCCUAGUGGCCUUUGCGGCAG -------------....(((..(((.((........)))))..))).(((....)))...(((((....(((((.......)))))....))))).. ( -20.20, z-score = -1.54, R) >droSec1.super_11 2794893 84 + 2888827 -------------AUAAGUUUUCCAACACUAACAUUUGUCGUUGACAGAAACUCUUCACCGCCGUCCUUGCCAUCUGCCUAGUGGCCUUUGCGGCAG -------------...((((((.((((((........)).))))...)))))).......(((((....(((((.......)))))....))))).. ( -21.10, z-score = -2.31, R) >droYak2.chr3L 23376090 76 + 24197627 ---------------------UACGUUUUUGGCAUACAUUCUUAACAGAAACUCUUCAAUGCCGUCCUUACCAUCUGCCUAGUGAGCUUCGCGGCCG ---------------------...(((((((..............)))))))........(((((.(((((..........)))))....))))).. ( -14.54, z-score = -0.91, R) >droAna3.scaffold_13337 22627534 83 + 23293914 --------------CUAAUACAAAAUUAAAAAUUGUUUACCAUUUCAGAAAUUCCUUGUUGGGGCCUUCGUUCUGAGUCUGGUGGCCUUUGUAGCUG --------------....((((((..........(..(((((.(((((((..((((....))))......)))))))..)))))..))))))).... ( -15.50, z-score = -0.27, R) >droVir3.scaffold_13049 10929450 80 - 25233164 -----------------UUGAACUGUUCUCGAUUUUCUUUAUUCACAGAAACUCUUUAUCGCCGCAAUCUCUCUUUGCCUGGUGGCCAUUGCCGCAG -----------------.....((((....((.(((((........))))).))......(((((((.......))))..)))(((....))))))) ( -13.80, z-score = -0.62, R) >consensus ________________AGUUAUCCAUCAUUAACAUUUUUCCUUCACAGAAACUCUUCACCGCCGUCCUUGCCAUCUGCCUAGUGGCCUUUGCGGCAG ............................................................(((((....(((((.......)))))....))))).. ( -8.16 = -8.80 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:57 2011