| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,881,907 – 22,881,997 |
| Length | 90 |
| Max. P | 0.979988 |
| Location | 22,881,907 – 22,881,997 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 66.41 |
| Shannon entropy | 0.44615 |
| G+C content | 0.57550 |
| Mean single sequence MFE | -33.20 |
| Consensus MFE | -19.01 |
| Energy contribution | -19.46 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.04 |
| SVM RNA-class probability | 0.979988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22881907 90 + 24543557 UAGACCCUCGGGGGAGGUGGGGCGGUGCGGUGAGACUGUUCACACUAGCCGUCCUGCAAGCCACACAAAUAUGUGGCCGACAAUGGUCGC ..((((.((((.((..(..(((((((..((((.((....)).)))).)))))))..)...)).((((....)))).))))....)))).. ( -39.40, z-score = -2.20, R) >droYak2.chr3L 23364877 77 + 24197627 -------UAGCUUUUGCGGGAGCGGGACGGG--CACAGUUCACAUUGUCCGUCCUGCAAUCCACAAAAUAAUGUGGCCCGAACCGC---- -------..((.....((((.((((((((((--((..(....)..))))))))))))...(((((......)))))))))....))---- ( -35.10, z-score = -4.28, R) >droEre2.scaffold_4784 22529422 79 + 25762168 -------AAGCUUGUGGUGGAGCGGGACGGGGGCACAGUUCACAUUAUCGGUCCUGGAAUCCACAAAAUAAUGUGGCCCGAACCGC---- -------......(((((....((((.(.(((((.(.((.......)).)))))).)...(((((......))))))))).)))))---- ( -25.10, z-score = -0.46, R) >consensus _______UAGCUUGUGGUGGAGCGGGACGGGG_CACAGUUCACAUUAUCCGUCCUGCAAUCCACAAAAUAAUGUGGCCCGAACCGC____ .................(((.((((((((((................))))))))))...(((((......))))))))........... (-19.01 = -19.46 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:55 2011