| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,872,470 – 22,872,545 |
| Length | 75 |
| Max. P | 0.569142 |
| Location | 22,872,470 – 22,872,545 |
|---|---|
| Length | 75 |
| Sequences | 11 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 75.90 |
| Shannon entropy | 0.48926 |
| G+C content | 0.51375 |
| Mean single sequence MFE | -15.87 |
| Consensus MFE | -7.28 |
| Energy contribution | -7.40 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22872470 75 + 24543557 CGACGAUGAGCAAGAGGACCAGAAGGAGUACCGCUGGGAAACGGGCUAUGAAAAGACAUGGUGCGAUGGUGUGCG .........(((.....((((......((((((((.(....).))).(((......))))))))..)))).))). ( -21.10, z-score = -2.54, R) >droSim1.chr3L 22144124 75 + 22553184 CGACGAUGAGCAGGAGGACCAGAAGGAGUACCGCUGGGAAACGGGCUAUGAAAAGACAUGGUGCGAUGGUGUGCG .........(((.....((((......((((((((.(....).))).(((......))))))))..)))).))). ( -20.00, z-score = -1.90, R) >droSec1.super_11 2773229 75 + 2888827 CGACGAUGAGCAGGAGGACCAGAAGGAGUACCGCUGGGAAACGGGCUAUGAAAAGACAUGGUGCGAUGGUGUGCG .........(((.....((((......((((((((.(....).))).(((......))))))))..)))).))). ( -20.00, z-score = -1.90, R) >droEre2.scaffold_4784 22514233 75 + 25762168 CGACGAUGAGCAAGAAGACCAGAAGGAGUACCGCUGGGAAACGGGCUAUGAAAAGACAUGGUGCGAUUGUGUGCG .........(((......((....)).((((((((.(....).))).(((......)))))))).......))). ( -19.20, z-score = -1.94, R) >droYak2.chr3L 23347111 75 + 24197627 CGACGAUGAUCAUGAGGACCAGAAGGAGUACCGCUGGGAAACGGGCUAUGAAAAGACAUGGUGCGAUGGUGUGCG ((((.((.(((.......((....)).((((((((.(....).))).(((......))))))))))).)))).)) ( -20.10, z-score = -1.79, R) >dp4.chrXR_group6 10299232 71 - 13314419 UGAUGACGACCGCGACGAUCAGAAGGAGUACCGCUGGGAGACGGGAUAUGAGAAGACAUGGUAAUAUUGCG---- ..........(((((..((((...((....)).((.(....).)).............))))....)))))---- ( -11.40, z-score = 0.34, R) >droPer1.super_9 2329160 71 - 3637205 UGAUGACGACCGCGACGAUCAGAAGGAGUACCGUUGGGAGACGGGAUAUGAGAAGACAUGGUAAUAUUGCG---- .((((...(((((..(........)..)).(((((....)))))...............)))..))))...---- ( -11.30, z-score = 0.35, R) >droWil1.scaffold_180949 4271039 59 + 6375548 CGACAUGGAAGAAGAUGACCAAAAAGAAUACCGUUGGGAAACUGGCUAUGAGAAGACAU---------------- ...(((((....((.(..((((...(.....).))))..).))..))))).........---------------- ( -9.30, z-score = -2.15, R) >droVir3.scaffold_13049 10891805 63 - 25233164 UGACGAUGAGCAAGAUGACCAAAAAGAGUAUCGCUGGGAAACCGGCUACGAGAAGACUUGGUA------------ .................(((((.....(((..(((((....))))))))........))))).------------ ( -15.42, z-score = -2.43, R) >droMoj3.scaffold_6680 12950366 63 + 24764193 CGACGAUGAUCAAGACGACCAAAAGGAGUACCGUUGGGAGACUGGCUAUGAAAAGACUUGGUA------------ ........((((((....((....))......((..(....)..))..........)))))).------------ ( -13.70, z-score = -1.32, R) >droGri2.scaffold_15110 15883153 63 + 24565398 UGACGAUGAACAAGACGAUCAAAAGGAGUAUCGCUGGGAGACUGGCUACGAGAAAACAUGGUA------------ ..((.(((.....((...((.....))...))((..(....)..))..........))).)).------------ ( -13.10, z-score = -2.00, R) >consensus CGACGAUGAGCAAGACGACCAGAAGGAGUACCGCUGGGAAACGGGCUAUGAAAAGACAUGGUACGAU_GUG____ .................((((...((....))(((.(....).)))............))))............. ( -7.28 = -7.40 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:54 2011