| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,853,581 – 22,853,635 |
| Length | 54 |
| Max. P | 0.998813 |
| Location | 22,853,581 – 22,853,635 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 54.05 |
| Shannon entropy | 0.68553 |
| G+C content | 0.56097 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -9.68 |
| Energy contribution | -12.30 |
| Covariance contribution | 2.62 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.50 |
| SVM RNA-class probability | 0.998813 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 22853581 54 - 24543557 GUGGUCAGUGGCCAGUGGCCAGUAGCCAGUGUCCAGUGUCCAGUGGUCAGUAAC------------ .(((.((.(((.((.((((.....)))).)).))).)).)))............------------ ( -20.80, z-score = -4.14, R) >dp4.chrXR_group6 10272741 65 + 13314419 GGGGCCUGGGCAGGCAGGUCUGUCUUU-GUUUCGAUUGGUUUUUGGGCAUUUUCCAAAGUAAUUCC (..((..(((((((....)))))))..-))..)((.....(((((((.....)))))))....)). ( -18.70, z-score = -0.99, R) >droPer1.super_9 2301122 65 + 3637205 GGGGCCUGGGCAGGCAGGUCUGUCUUU-GUUUCGAUUGGUUUUUGGGCAUUUUCCAAAGUAAUUCC (..((..(((((((....)))))))..-))..)((.....(((((((.....)))))))....)). ( -18.70, z-score = -0.99, R) >droAna3.scaffold_13117 2689273 54 - 5790199 GUGGCCAGUGGUCAGUGUCCAGUGGCCAGUGGCCAGUGUCCAGUGGCCGGUGAC------------ .....((.((((((.((..((.(((((...))))).))..)).)))))).))..------------ ( -27.10, z-score = -3.94, R) >consensus GGGGCCAGGGCACACAGGCCAGUCGCC_GUGUCCAGUGGCCAGUGGGCAGUUAC____________ .((((((((((((((((((.....))))))))))))))))))........................ ( -9.68 = -12.30 + 2.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:54 2011