| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,172,934 – 6,172,985 |
| Length | 51 |
| Max. P | 0.664660 |
| Location | 6,172,934 – 6,172,985 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 92.16 |
| Shannon entropy | 0.13716 |
| G+C content | 0.42745 |
| Mean single sequence MFE | -9.62 |
| Consensus MFE | -7.42 |
| Energy contribution | -8.46 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6172934 51 + 23011544 CUCACAGCACUUACCACUGAAAACAGUGAAACAACUUUUAUGGCAAUGAAC .(((..((......(((((....)))))......(......)))..))).. ( -7.40, z-score = -1.34, R) >droSim1.chr2L 5965746 51 + 22036055 CUCACAGCACUUACCACUGGAAACAGUGGAACAACUUUUAUGGCAAUGAAC .(((..((.....((((((....)))))).....(......)))..))).. ( -15.20, z-score = -4.33, R) >droSec1.super_5 4244240 51 + 5866729 CUCACUGCACUUACCACUGGAAACAGUGGAACAACUUUUAUGGCAAUCAAC .....(((.....((((((....)))))).....(......))))...... ( -14.60, z-score = -4.37, R) >droYak2.chr2L 15586417 51 - 22324452 CUCGCAGCACUUACCACUGGAAGCUCUGGAACAACUUUUAUGGCAAUGAAC .((.(((.........))))).(((.(((((....))))).)))....... ( -5.20, z-score = 0.88, R) >droEre2.scaffold_4929 15100319 51 + 26641161 CUCACAGCACUUACCACUGGAAACACUGAAACAACUUUAAUGGCAAUGAAC .(((..((......((.((....)).))......(......)))..))).. ( -5.70, z-score = -1.26, R) >consensus CUCACAGCACUUACCACUGGAAACAGUGGAACAACUUUUAUGGCAAUGAAC .(((..((.....((((((....)))))).....(......)))..))).. ( -7.42 = -8.46 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:35 2011