| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,843,245 – 22,843,304 |
| Length | 59 |
| Max. P | 0.614451 |
| Location | 22,843,245 – 22,843,304 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 70.61 |
| Shannon entropy | 0.52920 |
| G+C content | 0.47803 |
| Mean single sequence MFE | -15.05 |
| Consensus MFE | -6.87 |
| Energy contribution | -6.07 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22843245 59 - 24543557 AUUGAGGCGCUUCCUAACUAU--UGUAAGGUUAUGUAAUGUCGCCUCAAUGCUGACUCCUG ((((((((((..(.(((((..--.....))))).)....).)))))))))........... ( -15.90, z-score = -3.00, R) >droPer1.super_9 2285377 59 + 3637205 CUGCAGGCGAUUCCGGACCUC--CAGGAGCUUCUCCAUUGUGGACUCAAUGGUGAUCUCUG (((.(((((....))..))).--)))(((..((.((((((......)))))).)).))).. ( -17.20, z-score = -0.29, R) >dp4.chrXR_group6 10258273 59 + 13314419 CUGCAGGCGAUUCCGGACCUC--CAGGAGCUUCUCCAUUGUGGACUCAAUGGUGAUCUCUG (((.(((((....))..))).--)))(((..((.((((((......)))))).)).))).. ( -17.20, z-score = -0.29, R) >droYak2.chr3L 23318743 54 - 24197627 AUUAAGACGAUUCCUUACCACCGUGUGAGGUUAUGUAUUGUCGGCUCAAUGCUG------- .....((((((.((((((......))))))......))))))(((.....))).------- ( -14.00, z-score = -1.88, R) >droSec1.super_11 2745604 59 - 2888827 AUUGAGACGAUUCCUAACCAU--GGUAAGGUUAUGUAUUGUCGACUCAACGCUAACUCCUG .(((((.((((.(.(((((..--.....))))).)....)))).)))))............ ( -12.80, z-score = -1.56, R) >droSim1.chr3L 22115932 59 - 22553184 AUUGAGGCGAUUCCUAACCAU--UGUAAGGUUAUGUGUUGUCGACUCAACGCUAACUCCUG .(((((.((((.(.(((((..--.....))))).)....)))).)))))............ ( -13.20, z-score = -1.51, R) >consensus AUUGAGGCGAUUCCUAACCAC__UGUAAGGUUAUGUAUUGUCGACUCAAUGCUGACUCCUG ..............(((((.........))))).((((((......))))))......... ( -6.87 = -6.07 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:52 2011