| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,836,362 – 22,836,438 |
| Length | 76 |
| Max. P | 0.577961 |
| Location | 22,836,362 – 22,836,438 |
|---|---|
| Length | 76 |
| Sequences | 13 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 98.25 |
| Shannon entropy | 0.04062 |
| G+C content | 0.59169 |
| Mean single sequence MFE | -19.77 |
| Consensus MFE | -19.39 |
| Energy contribution | -19.25 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22836362 76 - 24543557 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACA (((((.......)))))(((....(-((..(.(((((.......))))))..))).((....))))).......... ( -19.90, z-score = -1.01, R) >droSim1.chr3L 22106572 76 - 22553184 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACA (((((.......)))))(((....(-((..(.(((((.......))))))..))).((....))))).......... ( -19.90, z-score = -1.01, R) >droSec1.super_11 2736707 76 - 2888827 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACA (((((.......)))))(((....(-((..(.(((((.......))))))..))).((....))))).......... ( -19.90, z-score = -1.01, R) >droYak2.chr3L 23311857 76 - 24197627 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACA (((((.......)))))(((....(-((..(.(((((.......))))))..))).((....))))).......... ( -19.90, z-score = -1.01, R) >droEre2.scaffold_4784 22474616 76 - 25762168 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACA (((((.......)))))(((....(-((..(.(((((.......))))))..))).((....))))).......... ( -19.90, z-score = -1.01, R) >droAna3.scaffold_13337 13588052 76 - 23293914 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACU (((((.......)))))(((....(-((..(.(((((.......))))))..))).((....))))).......... ( -19.90, z-score = -1.06, R) >droWil1.scaffold_180708 4988470 76 + 12563649 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACA (((((.......)))))(((....(-((..(.(((((.......))))))..))).((....))))).......... ( -19.90, z-score = -1.01, R) >droPer1.super_9 2278502 76 + 3637205 GUGGGAUUCGAACCCACGCCUACAGAAGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGAC- (((((.......))))).....(((.....(.(((((.......))))))(((...........)))....)))..- ( -19.70, z-score = -1.09, R) >dp4.chrXR_group6 10251364 76 + 13314419 GUGGGAUUCGAACCCACGCCUACAGAAGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGAC- (((((.......))))).....(((.....(.(((((.......))))))(((...........)))....)))..- ( -19.70, z-score = -1.09, R) >droVir3.scaffold_13049 10840153 76 + 25233164 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACA (((((.......)))))(((....(-((..(.(((((.......))))))..))).((....))))).......... ( -19.90, z-score = -1.01, R) >droMoj3.scaffold_6680 12899763 76 - 24764193 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACU (((((.......)))))(((....(-((..(.(((((.......))))))..))).((....))))).......... ( -19.90, z-score = -1.06, R) >droGri2.scaffold_15110 15825399 76 - 24565398 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACA (((((.......)))))(((....(-((..(.(((((.......))))))..))).((....))))).......... ( -19.90, z-score = -1.01, R) >anoGam1.chr2R 25723624 75 - 62725911 GUGGGAUUCGAACCCACGCCUACAG-AGUAGACUACGACCUGAACGUAGCGCCUUAGACCGCUCGGCCAUCCUGAC- (((((.......)))))(((..(((-.((........)))))...(.((((........)))))))).........- ( -18.60, z-score = -0.52, R) >consensus GUGGGAUUCGAACCCACGCCUACAG_AGUAGACUGCGACCUGAACGCAGCGCCUUAGACCACUCGGCCAUCCUGACA (((((.......)))))..((((....)))).(((((.......))))).(((...........))).......... (-19.39 = -19.25 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:49 2011