| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,823,056 – 22,823,167 |
| Length | 111 |
| Max. P | 0.733873 |
| Location | 22,823,056 – 22,823,167 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 87.17 |
| Shannon entropy | 0.22010 |
| G+C content | 0.45072 |
| Mean single sequence MFE | -19.03 |
| Consensus MFE | -16.49 |
| Energy contribution | -16.89 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.733873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22823056 111 - 24543557 AUACUUAUGUAUAAUCCUGUCACACGUGAGUCCUUCACGUGCAUUGGCAAAAACGUUCGCUCCAUUUCAGCCAGCUCUAAUUAUCCCCUCAACUUGUUCAAGAGCGCUCUA- ((((....)))).....(((((((((((((...))))))))...))))).........(((.......)))..(((((......................)))))......- ( -19.75, z-score = -1.33, R) >droSim1.chr3L 22093402 112 - 22553184 AUAGUUGUGUAUAAUCCUGUCACACGUGAGUCCUUCACGUUCAUCGGUAAAAACGUUCGCUCCGUUUCAGCCAGCUCUAAUUAUCCCUUCAACUUGUUCAAGAGCGCUCCCA ......(((.(((....))))))(((((((...))))))).....(((..(((((.......)))))..))).(((((......................)))))....... ( -19.55, z-score = -1.43, R) >droSec1.super_11 2723410 112 - 2888827 AUAGUUGUGUAUAAUCCUGUCACACGUGAGUCCUUCACGUGCAUCGGUAAAAACGUUCGCUCCGUUUCAGCCAGCUCUAAUUAUCCCCUCAACUUGUUCAAGAGCGCUCCCA ......(((.(((....))))))(((((((...)))))))((...(((..(((((.......)))))..))).(((((......................)))))))..... ( -22.15, z-score = -1.79, R) >droYak2.chr3L 23293587 107 - 24197627 ----GUACUUAUAAUCCUGUCACACGUGAGUCCUUCACGUGCAUCGGUAAAAACGUUCGGUCCAUUUCAGCCAGCUCUAAUUAUUUCCUCAACUUAUUCAAGAGCGCUUCA- ----............(((...((((((((...))))))))...)))...........(((........))).(((((......................)))))......- ( -18.35, z-score = -1.42, R) >droEre2.scaffold_4784 22460814 108 - 25762168 ----AUACUUCUAAUCCUGUCACACGUGAGCCCUUCACGUGCAUCCGUAAAAAUGUUUGGCCCGUUUCAACCAGCUCUAAUUAUCCCCUCAACUUAUUCAAGAGCGCUCUCA ----.....................(.((((.....(((.(((..(((....)))..).)).)))........(((((......................))))))))).). ( -15.35, z-score = -0.98, R) >consensus AUA_UUAUGUAUAAUCCUGUCACACGUGAGUCCUUCACGUGCAUCGGUAAAAACGUUCGCUCCGUUUCAGCCAGCUCUAAUUAUCCCCUCAACUUGUUCAAGAGCGCUCCCA ......................((((((((...))))))))....(((..(((((.......)))))..))).(((((......................)))))....... (-16.49 = -16.89 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:48 2011