| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,813,681 – 22,813,774 |
| Length | 93 |
| Max. P | 0.822301 |
| Location | 22,813,681 – 22,813,774 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 71.89 |
| Shannon entropy | 0.46942 |
| G+C content | 0.31356 |
| Mean single sequence MFE | -22.26 |
| Consensus MFE | -8.88 |
| Energy contribution | -10.28 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.822301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22813681 93 + 24543557 GAUAAAAAAGGUCUUGAAGAUAGCGUUGCUUUUUCUGGAUCUGUAAUUUAUCAAGGACUUUUGCCUGAAUA--------AGUUACAUGGAUAAAGCUCAAA ........((((((.(((((.(((...)))))))).))))))(((((((((..(((.(....))))..)))--------))))))................ ( -22.50, z-score = -2.04, R) >droSim1.chr3L 22082190 101 + 22553184 GAUAAAAAAGGUCUAGAAGAUAGCGUUGCUUUUUCUGGAUCUGUAAUUUACCAAGGACUUUUGGCUGAAUAUAUAUGUAAGUCACAUGGAUUCAGCUCAAA ........((((((((((((.(((...))))))))))))))).................(((((((((((...(((((.....))))).))))))).)))) ( -29.50, z-score = -3.44, R) >droSec1.super_11 2713710 96 + 2888827 GAUAAAAAAGGUCUAGAAGAUAGCGUUGCUGUUUCUGGAUCUGUAAUUUAUCAAGGACUUUUGGCUGAAUAUAUAUGUAAGUCACAUGGAUUCAGC----- ((((((..(((((((((.((((((...)))))))))))))))....))))))...........(((((((...(((((.....))))).)))))))----- ( -31.50, z-score = -4.67, R) >droYak2.chr3L 23283390 89 + 24197627 GAUAAAAUUGGUUUAGAAAAUAGCCUUCCCUUUUCUUGAUCUGUUAUUUAUCAAGG--CUGAAAUUAUA----------AAUUACAUGGAUUAAGCUCAAA .........((((........)))).........((((((((((.((((((.((..--......)))))----------)))...))))))))))...... ( -11.10, z-score = 0.76, R) >droEre2.scaffold_4784 22450698 87 + 25762168 GAUAAAAUUUGUUUUGAAAAUAGUAGUC--UUUUUCUGGACUGUUAUUUUUCAAGG--CUUUAUAUAUA----------AAUCACGUGGAUUAAGUUCAAA ..........((((((((((((((((((--(......))))))))).)))))))))--)..........----------((((.....))))......... ( -16.70, z-score = -1.99, R) >consensus GAUAAAAAAGGUCUAGAAGAUAGCGUUGCUUUUUCUGGAUCUGUAAUUUAUCAAGGACUUUUGGCUGAAUA________AGUCACAUGGAUUAAGCUCAAA ((((((..((((((((((((..........))))))))))))....))))))................................................. ( -8.88 = -10.28 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:48 2011