| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,795,458 – 22,795,516 |
| Length | 58 |
| Max. P | 0.965431 |
| Location | 22,795,458 – 22,795,516 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 54.71 |
| Shannon entropy | 0.62029 |
| G+C content | 0.41609 |
| Mean single sequence MFE | -14.17 |
| Consensus MFE | -8.17 |
| Energy contribution | -7.07 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22795458 58 - 24543557 UUCAAACAAACACUCAUAUGGAAUGUCCCAAAUGGGGCAUGGUGGAUGUGGAUCAGUG .........(((..(((.....(((((((....))))))).)))..)))......... ( -16.00, z-score = -1.08, R) >droSim1.chr3L 22080040 54 - 22553184 ----UUCACACAUUCGUAUGGAAUGUCCCAAAUGGGGCAUGGUGGAUGUGGAUCAGCG ----.((.(((((((((.....(((((((....))))))).)))))))))))...... ( -19.40, z-score = -2.20, R) >droSec1.super_11 2711715 50 - 2888827 --------UGCGUAAAAAUAGAUAAGAUCAAACUUUUUAGCUUGAUUUUUGAUCAGCG --------............(((((((((((.((....)).))))))))..))).... ( -7.10, z-score = -0.44, R) >consensus ______CAAACAUUCAUAUGGAAUGUCCCAAAUGGGGCAUGGUGGAUGUGGAUCAGCG ...........((((((((...(((((((....))))))).....))))))))..... ( -8.17 = -7.07 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:47 2011