| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,775,089 – 22,775,192 |
| Length | 103 |
| Max. P | 0.903251 |
| Location | 22,775,089 – 22,775,192 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 86.75 |
| Shannon entropy | 0.17721 |
| G+C content | 0.29655 |
| Mean single sequence MFE | -22.05 |
| Consensus MFE | -15.31 |
| Energy contribution | -15.53 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22775089 103 + 24543557 GCUGAAGUUAUGGAAAAUGUUAUGUACCUUUAUAACUGUUUU--AGCCCACCGAGAGGUGAUUU---------AUUUUGAUUUUACAAAACCUGUAAGAACGAAAAUCCACAUG ((((((((((((((..............)))))))))...))--))).((((....))))....---------.(((((.(((((((.....))))))).)))))......... ( -23.34, z-score = -3.06, R) >droSim1.chr3L 22058295 105 + 22553184 GCUGAAGUUAUUGAAAAUGUUAUAUAUUUAUAUAACUUUUUUUUAGUCCGCAAAGAGGUGAUUU---------AUUUUGAUUUUACAAAACCUGUAAGAACGAAAAUCCACAAG ((.((...((..(((((.(((((((....))))))))))))..)).)).))......(((....---------.(((((.(((((((.....))))))).)))))...)))... ( -18.40, z-score = -1.78, R) >droSec1.super_11 2690056 113 + 2888827 GCUGAAGUUAUUGAAAAUGUUAUAUAUUUAUAUAACUUUUUUU-AGUCCGCCAAGAGGUGAUUUUGUGAUGAUAUUUUGAUUUUACAAAACCUGUAAGAACGAAAAUCCACAAG .........((((((((.(((((((....)))))))..)))))-))).((((....))))...(((((..(((.(((((.(((((((.....))))))).))))))))))))). ( -24.40, z-score = -3.25, R) >consensus GCUGAAGUUAUUGAAAAUGUUAUAUAUUUAUAUAACUUUUUUU_AGUCCGCCAAGAGGUGAUUU_________AUUUUGAUUUUACAAAACCUGUAAGAACGAAAAUCCACAAG ............(((((.((((((......)))))).)))))......((((....))))..............(((((.(((((((.....))))))).)))))......... (-15.31 = -15.53 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:45 2011