| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,766,564 – 22,766,640 |
| Length | 76 |
| Max. P | 0.997564 |
| Location | 22,766,564 – 22,766,640 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 90.26 |
| Shannon entropy | 0.17428 |
| G+C content | 0.61079 |
| Mean single sequence MFE | -30.56 |
| Consensus MFE | -29.66 |
| Energy contribution | -29.22 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -3.04 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.13 |
| SVM RNA-class probability | 0.997564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22766564 76 + 24543557 UUGGGCUUGCGUCGCAACAGCACACACAGUGCUGUUAGUGGCGCCCUCCCGCUCUCGCAUUCGCACGCU-UCUCAGU ..(((...(((((((((((((((.....)))))))).)))))))...)))......((....)).....-....... ( -30.50, z-score = -2.83, R) >droEre2.scaffold_4784 22415058 77 + 25762168 UUGGGCCUGCGUCGCAACAGCACACACAGUGCUGUUAGUGGCGCCCUCUCGCUCCUGCUUUCGCACGCUCUCUCAGU ..((((.((((((((((((((((.....)))))))).)))))........((....))....))).))))....... ( -30.40, z-score = -2.63, R) >droYak2.chr3L 23251828 71 + 24197627 UUGGGCUUGCGUCACAACAGCACACACAGUGCUGUUAGUGGCUCCCUCUCGCUCGCGCACU------CUCUCCCAGU (((((.....(((((((((((((.....)))))))).)))))........((....))...------....))))). ( -25.50, z-score = -2.67, R) >droSec1.super_11 2681727 77 + 2888827 UUGGGCUUGCGCCGCAACAGCACACACAGUGCUGUUAGUGGCGCCCUCCCGCUCUCGCAUUCGCACGCUCUCUCAGU ..(((...(((((((((((((((.....)))))))).)))))))...)))......((....))............. ( -33.20, z-score = -3.53, R) >droSim1.chr3L 22049801 77 + 22553184 UUGGGCUUGCGCCGCAACAGCACACACAGUGCUGUUAGUGGCGCCCUCCCGCUCUCGCAUUCGCACGCUCUCUCAGU ..(((...(((((((((((((((.....)))))))).)))))))...)))......((....))............. ( -33.20, z-score = -3.53, R) >consensus UUGGGCUUGCGUCGCAACAGCACACACAGUGCUGUUAGUGGCGCCCUCCCGCUCUCGCAUUCGCACGCUCUCUCAGU ..(((...(((((((((((((((.....)))))))).)))))))...)))((....))................... (-29.66 = -29.22 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:44 2011