| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,748,853 – 22,748,922 |
| Length | 69 |
| Max. P | 0.623537 |
| Location | 22,748,853 – 22,748,922 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 62.03 |
| Shannon entropy | 0.77405 |
| G+C content | 0.40926 |
| Mean single sequence MFE | -12.87 |
| Consensus MFE | -5.40 |
| Energy contribution | -6.30 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.83 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22748853 69 - 24543557 UUAAGCCUUUGUCAAGACAUGAAGUGGGAUGACCAACAAAGGUUGUCAGGAACUUCGAAAAGUACAGAC .......(((((.......((((((..((..(((......)))..))....))))))......))))). ( -15.62, z-score = -1.06, R) >droSec1.super_11 2669550 69 - 2888827 UUAAGCCUUUGUCAGGACAUGAAGUGGGAUGACCAACAAAGGUUGUCAGGAGCUUCGAAAAGUACAGUC ....((((.....))).).((((((..((..(((......)))..))....))))))............ ( -16.30, z-score = -0.87, R) >droSim1.chr3L 22035517 69 - 22553184 UUAAGCCUUUGUCAGGACAUGAAGUGGGAUGACCAACAAAGGUUGUCAGGAGCUUCGAAAAGUACAGUC ....((((.....))).).((((((..((..(((......)))..))....))))))............ ( -16.30, z-score = -0.87, R) >droYak2.chr3L 23242757 68 - 24197627 UUAAGCUUUUGUUAGGAUAUGAAGUGGGCCAACAAA-AUAGGUUGUCAGGAGCUUCGAAAAGUACGAGC ..(((((((((.(((..(((....((......))..-)))..))).))))))))).............. ( -11.80, z-score = -0.04, R) >droEre2.scaffold_4784 22400251 69 - 25762168 UUAAGCUUUUGUUAGGACAUGAAGUGGGUUGGCCAACAAAGGUCGUCAGGAACUUCGAAAAGUGCAGUC ....((((((((....)).((((((..(.(((((......))))).)....))))))))))))...... ( -14.40, z-score = -0.25, R) >droMoj3.scaffold_6680 11957960 66 + 24764193 ---AACCUUUGUGCAUGCAGGCAAUGCAUACACAGAUAACAAGAGAAAGAGACUGUAAGAGAUAGAGAG ---....((((((.(((((.....))))).))))))................((((.....)))).... ( -12.70, z-score = -2.38, R) >triCas2.chrUn_39 97160 58 + 163124 ----------UUGAGCUCUUGCAAAGCUUUAAAGAAAAAAAAGUCGUAAAAAAUCUAAACCUUUAAAC- ----------..(((((.......))))).......................................- ( -3.00, z-score = 0.97, R) >consensus UUAAGCCUUUGUCAGGACAUGAAGUGGGAUGACCAACAAAGGUUGUCAGGAACUUCGAAAAGUACAGUC ...................((((((..((((((........))))))....))))))............ ( -5.40 = -6.30 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:41 2011