| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,731,518 – 22,731,636 |
| Length | 118 |
| Max. P | 0.706138 |
| Location | 22,731,518 – 22,731,636 |
|---|---|
| Length | 118 |
| Sequences | 7 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 66.95 |
| Shannon entropy | 0.61046 |
| G+C content | 0.55435 |
| Mean single sequence MFE | -41.22 |
| Consensus MFE | -19.54 |
| Energy contribution | -17.86 |
| Covariance contribution | -1.68 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.706138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22731518 118 + 24543557 AUAGGCGGGCACGAUUGCGAUUCCAGUGACGGCGGAGAAAGCUCGAUCAACGG-AGAGCUUUGGUCUCUGUUGUCAGAUUGGAGAGCAAAGUCAAGGCCGCGGAUAAGCACUCUCGUUC ...(((((((..((((((..((((((((((((((((((((((((.........-.))))))...))))))))))))..)))))).)))..)))...)))((......)).....)))). ( -44.30, z-score = -1.98, R) >droPer1.super_96 137247 102 - 202244 ---------------AACGGUGGAGGUGCCAGUGACAGUACCAGUGCCAAUGGCAUCGGUUUGGCUGCGAUCGGCCG--UGAUAAGCGUGGGCAUAGCUUCGGCUGACGGUUGUUAUCU ---------------.(((((.((..(((.(((..(((.(((.(((((...))))).)))))))))))).)).))))--)(((((.(((.(((.........))).))).))))).... ( -37.40, z-score = -0.58, R) >dp4.chrXR_group8 410788 102 + 9212921 ---------------AACGGUGGAGGUGCCAGUGACAGUACCAGUGCCAAUGGCAUCGGUUUGGCUGCGAUCGGCCG--UGAUAAGCGUGGGCAUAGCUUCGGCCGACGGUUGUUAUCU ---------------.(((((.((..(((.(((..(((.(((.(((((...))))).)))))))))))).)).))))--)(((((.(((.(((.........))).))).))))).... ( -39.20, z-score = -0.89, R) >droSim1.chr3L 22018610 118 + 22553184 AUAGGCGGGCACGAUUCCGAUUCCAGUGACGGCGGAGAAAGCUCGAUCAACGG-AGAGCUUUGGUCUCUGCUGUCGGAUUGGAGAGCAAAGUCAAGGCCGCGGAUAAGCACUCUCGUUC ...(((((((..((((..(.((((((((((((((((((((((((.........-.))))))...)))))))))))..)))))))..)..))))...)))((......)).....)))). ( -43.00, z-score = -0.99, R) >droSec1.super_11 2652325 118 + 2888827 AUAGGCGGGCACGAUUCCGAUUCCAGUGACGGCGGAGAAAGCUCGAUCAACGG-AGAGCUUUGGUCUCUGUUGUCGGAUUGGAGAGCAAAGUCAAGGCCGCGGAUAAGCACUCUCGUUC ...(((((((..((((..(.((((((((((((((((((((((((.........-.))))))...)))))))))))..)))))))..)..))))...)))((......)).....)))). ( -40.50, z-score = -0.56, R) >droYak2.chr3L 23222594 118 + 24197627 ACAGGCGAACACGAUUCCAAUUCCAGUGCCGGCGGAGAAAGCUCGAUCAACGG-AGAGCUUUGGUCUCUGUUGUCGGUUUGGAGAGCAAAGUCAAGGCCGCGGAUAAGCAUUCUCCUCC ...((((.....((.......))...))))((.((((((.(((..(((..(((-...((((((.((((((.........)))))).)))))).....)))..))).))).)))))).)) ( -40.60, z-score = -1.00, R) >droEre2.scaffold_4784 22382863 117 + 25762168 AUUGGCGAACACAAU-CCGAUUGCAGUGCCCGUGGAGAAAGCUCGAUCAACGG-AGAGCUUUGGCCUCUGUUGUCGGAUUGGAGAGCAAAGUCAAGGCCGCGGAUAAGCGCUCUCUUUG ...........((((-(((((.((((.(((.......(((((((.........-.))))))))))..)))).)))))))))((((((...((....)).((......)))))))).... ( -43.51, z-score = -1.62, R) >consensus AUAGGCGGGCACGAUUCCGAUUCCAGUGCCGGCGGAGAAAGCUCGAUCAACGG_AGAGCUUUGGUCUCUGUUGUCGGAUUGGAGAGCAAAGUCAAGGCCGCGGAUAAGCACUCUCGUUC ...........................(((..((((((((((((...........))))))...))))))..)))......(((((....(((.........))).....))))).... (-19.54 = -17.86 + -1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:37 2011