| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,700,363 – 22,700,461 |
| Length | 98 |
| Max. P | 0.605377 |
| Location | 22,700,363 – 22,700,461 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 59.06 |
| Shannon entropy | 0.75241 |
| G+C content | 0.34034 |
| Mean single sequence MFE | -15.37 |
| Consensus MFE | -4.66 |
| Energy contribution | -5.58 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22700363 98 + 24543557 CUUUACCGAACCCAAAAAUGGCAUUCGUAGGAAAAUAAAUUUGACCUAGGAAAAAGGCUAGCUGCG--CCAAUCCGAAGCUUAUAUACUCUGGCAGUCAA------ .......((..(((....((((.(((.((((..((.....))..)))).)))....))))(((.((--......)).)))..........)))...))..------ ( -17.70, z-score = 0.51, R) >droSim1.chr3L 21987214 98 + 22553184 CUUUACCGAACCCAAAAAUGACAUUCGUAGGAAAAUAAAUUUUAACUAGGAAAAAAUCUAGCUUCG--UCAAUCCGAAGCUUAUAUACUCUUGCAGUCAA------ ..................((((.(((.(((..(((.....)))..))).))).......(((((((--......)))))))..............)))).------ ( -18.80, z-score = -2.62, R) >droSec1.super_11 2620648 98 + 2888827 CUUUACCGAACCCAAAAAUGACAUUCGUAGGAAAAUAAAUUUGAACUAGGAAAAAAUCUAGCUUCG--UCAAUCCGAAGCUUAUAUACUCUUGCAGUCAA------ ..................((((.(((.(((...((.....))...))).))).......(((((((--......)))))))..............)))).------ ( -17.50, z-score = -1.78, R) >droYak2.chr3L 23187271 82 + 24197627 -----CUUUACUCAAAAAUAC----------AUAGUAAAUUUGUUUUAAGACCAAA---AGUCUCACAGAAAAUAAAAUCUUAACCGCACUUAAACAUAA------ -----.((((((.........----------..))))))((((((((.((((....---.)))).....)))))))).......................------ ( -6.30, z-score = -0.84, R) >droAna3.scaffold_12948 31000 86 - 692136 CUGUUUUGAGGCAAAAUAU------------AAAAUAUAUAACAAGUAAGGAAAG--CUAACUUCGGGCGGAGCCGAAGUUUAUAUACCCUUGCAGUUGA------ .(((((((...))))))).------------........((((..((((((....--..((((((((......)))))))).......)))))).)))).------ ( -20.72, z-score = -1.79, R) >droWil1.scaffold_180943 86082 93 + 149748 --ACGUAAAGCCCAAAAAUUCCUUCC--------AUAAAUUA-AAAUAUUAAAGAAGCUAACUUCA--CUAUACCGAAGUUUAUAUACCUUUGCAGUCCUUUGCAA --..((((((..(........((((.--------.(((....-.....)))..))))..((((((.--.......))))))..............)..)))))).. ( -11.20, z-score = -1.87, R) >consensus CUUUACCGAACCCAAAAAUGACAUUC_____AAAAUAAAUUUGAACUAGGAAAAAA_CUAGCUUCG__CCAAUCCGAAGCUUAUAUACUCUUGCAGUCAA______ ..............................................(((((........(((((((........))))))).......)))))............. ( -4.66 = -5.58 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:35 2011