Locus 8431

Sequence ID	dm3.chr3L
Location	22,679,454 – 22,679,520
Length	66
Max. P	0.898763

overview

Window 2

Location	22,679,454 – 22,679,520
Length	66
Sequences	5
Columns	67
Reading direction	forward
Mean pairwise identity	87.31
Shannon entropy	0.22222
G+C content	0.51796
Mean single sequence MFE	-20.90
Consensus MFE	-18.24
Energy contribution	-18.40
Covariance contribution	0.16
Combinations/Pair	1.05
Mean z-score	-1.74
Structure conservation index	0.87
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.14
SVM RNA-class probability	0.898763
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 22679454 66 + 24543557
GUGUUGGACGCGCAUCAAAACUUUAUUGGAUCUCCUGCGGGCAGGAGAUACCAUGAGGAACAUGCG-
(((.....)))((((.....((((((.((((((((((....)))))))).))))))))...)))).- ( -25.10, z-score =  -3.56, R)
>droEre2.scaffold_4784 22329461 67 + 25762168
GUGUUGGACGCGCAGCAAAGCUUUAUUGGAUCUCCGCCGAGCAGGAGAUACCAUGAGGAGCAUGUGG
.(((((......)))))..(((((..(((((((((........)))))).)))...)))))...... ( -21.90, z-score =  -1.38, R)
>droYak2.chr3L 23146871 67 + 24197627
GUGUGGUACGCGCAUCGAGGCUUUAUUGGAUCUCCUCCAGCCAUGAGAUUCCAUGAGGAUCAUGUAG
(((.....)))((((.((..((((((.(((((((..........))))))).)))))).)))))).. ( -17.70, z-score =  -0.08, R)
>droSec1.super_11 2596221 67 + 2888827
GUGUUGGACGCGCAUCAAAACUUUAUUGGAUCUCCUCCGAGCCGGAGAUACCAUGAGGAACAUGCAG
(((.....)))((((.....((((((.((((((((........)))))).))))))))...)))).. ( -19.90, z-score =  -1.84, R)
>droSim1.chr3L 21963165 67 + 22553184
GUGUUGGACGCGCAUCAAAACUUUAUUGGAUCUCCUCCGAGCCGGAGAUACCAUGAGGAACAUGCAG
(((.....)))((((.....((((((.((((((((........)))))).))))))))...)))).. ( -19.90, z-score =  -1.84, R)
>consensus
GUGUUGGACGCGCAUCAAAACUUUAUUGGAUCUCCUCCGAGCAGGAGAUACCAUGAGGAACAUGCAG
(((.....)))((((.....((((((.((((((((........)))))).))))))))...)))).. (-18.24 = -18.40 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:31 2011